From 3e5350bb640b8e77727f35fc9606272a02bae0d4 Mon Sep 17 00:00:00 2001 From: Emilio Mayorga Date: Wed, 16 Oct 2024 23:15:43 -0700 Subject: [PATCH] Add more R dependencies for Hector's tutorial in OHW-en-espanol event --- r/Dockerfile | 4 +- r/conda-linux-64.lock | 91 ++++++++++++++++++++++--------------------- r/environment.yml | 1 + 3 files changed, 50 insertions(+), 46 deletions(-) diff --git a/r/Dockerfile b/r/Dockerfile index a705452..b532766 100644 --- a/r/Dockerfile +++ b/r/Dockerfile @@ -87,7 +87,7 @@ RUN Rscript -e "remotes::install_cran('assertthat', dependencies=FALSE, upgrade_ Rscript -e "remotes::install_cran('geonames', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_cran('readHAC', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_cran('rnoaa', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ - Rscript -e "remotes::install_cran('satin', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ + Rscript -e "remotes::install_cran('greybox', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_cran('sfnetworks', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_cran('smooth', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_github('BigelowLab/ohwobpg', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ @@ -99,6 +99,8 @@ RUN Rscript -e "remotes::install_cran('assertthat', dependencies=FALSE, upgrade_ Rscript -e "remotes::install_github('BigelowLab/hycom', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_github('hadley/emo', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_github('hvillalo/echogram', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ + Rscript -e "remotes::install_github('hvillalo/periods', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ + Rscript -e "remotes::install_github('hvillalo/satin', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_github('kwstat/pals', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" && \ Rscript -e "remotes::install_github('JorGarMol/VoCC', dependencies=FALSE, upgrade_dependencies=FALSE, upgrade=FALSE)" diff --git a/r/conda-linux-64.lock b/r/conda-linux-64.lock index aba6dae..e87b360 100644 --- a/r/conda-linux-64.lock +++ b/r/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: f1aa2354ed2cb3c66d332a826ef6689f2c11f6667ba98fd425e88dbf1fe2a1d0 +# input_hash: 14e740f705caa869b76806a168d973e8e241f499b4059e032c825c0589eb1b04 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38 @@ -17,23 +17,23 @@ https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.12-hd8ed1ab_0.con https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.9-5_cp39.conda#40363a30db350596b5f225d0d5a33328 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 -https://conda.anaconda.org/conda-forge/linux-64/gh-2.58.0-h76a2195_0.conda#8987b25ffdef8e2f4544a50c7ec276d4 +https://conda.anaconda.org/conda-forge/linux-64/gh-2.59.0-h76a2195_0.conda#f4a5ec48b85f2b1ca358849c73e6f825 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_1.conda#83e1364586ceb8d0739fbc85b5c95837 -https://conda.anaconda.org/conda-forge/noarch/libgcc-devel_linux-64-14.1.0-h5d3d1c9_101.conda#713834677de996ac1bc1b0b305ba46ba -https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_1.conda#23c255b008c4f2ae008f81edcabaca89 -https://conda.anaconda.org/conda-forge/noarch/libstdcxx-devel_linux-64-14.1.0-h5d3d1c9_101.conda#e007246a554aaf42f73fbfd4be8db3e4 +https://conda.anaconda.org/conda-forge/noarch/libgcc-devel_linux-64-14.2.0-h41c2201_101.conda#fb126e22f5350c15fec6ddbd062f4871 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702 +https://conda.anaconda.org/conda-forge/noarch/libstdcxx-devel_linux-64-14.2.0-h41c2201_101.conda#60b9a16fd147f7184b5a964aa08f3b0f https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_17.conda#f58cb23983633068700a756f0b5f165a https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.43-h4bf12b8_1.conda#5f354010f194e85dc681dec92405ef9e https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab -https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.1.0-h77fa898_1.conda#002ef4463dd1e2b44a94a4ace468f5d2 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.28-hb9d3cd8_0.conda#1b53af320b24547ce0fb8196d2604542 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.1-heb4867d_0.conda#db792eada25e970c46642f624b029fd7 +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.2-heb4867d_0.conda#2b780c0338fc0ffa678ac82c54af51fd https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.3-h5888daf_0.conda#59f4c43bb1b5ef1c71946ff2cbf59524 -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h69a702a_1.conda#1efc0ad219877a73ef977af7dbb51f17 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.1.0-hc5f4f2c_1.conda#10a0cef64b784d6ab6da50ebca4e984d -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.1.0-hc0a3c3a_1.conda#9dbb9699ea467983ba8a4ba89b08b066 -https://conda.anaconda.org/conda-forge/linux-64/libuv-1.49.0-hb9d3cd8_0.conda#925a0022e1fa4f888ceed96a309a5baf +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b +https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hd5240d6_1.conda#9822b874ea29af082e5d36098d25427d +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328 +https://conda.anaconda.org/conda-forge/linux-64/libuv-1.49.1-hb9d3cd8_0.conda#52849ca4b3be33ac3f01c77da737e068 https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8 https://conda.anaconda.org/conda-forge/linux-64/make-4.4.1-hb9d3cd8_2.conda#33405d2a66b1411db9f7242c8b97c9e7 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e @@ -56,16 +56,16 @@ https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda#8e88f9389f1165d7c0936fe40d9a9a79 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055 https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.1.0-h69a702a_1.conda#591e631bc1ae62c64f2ab4f66178c097 +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_1.conda#f1fd30127802683586f768875127a987 https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7 https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.44-hadc24fc_0.conda#f4cc49d7aa68316213e4b12be35308d1 -https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-14.1.0-hcba0ae0_1.conda#b56e6664bb9a57a29fd91df582223409 +https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-14.2.0-h2a3dede_1.conda#160623b9425f5c04941586da43bd1a9c https://conda.anaconda.org/conda-forge/linux-64/libsodium-1.0.20-h4ab18f5_0.conda#a587892d3c13b6621a6091be690dbca2 https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.1-hadc24fc_0.conda#36f79405ab16bf271edb55b213836dac https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.1.0-h4852527_1.conda#bd2598399a70bb86d8218e95548d735e +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051 https://conda.anaconda.org/conda-forge/linux-64/libudunits2-2.2.28-h40f5838_3.conda#4bdace082e911a3e1f1f0b721bed5b56 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.4.0-hd590300_0.conda#b26e8aa824079e1be0294e7152ca4559 @@ -83,7 +83,7 @@ https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.18-h2af50b2_12.con https://conda.anaconda.org/conda-forge/linux-64/bwidget-1.9.14-ha770c72_1.tar.bz2#5746d6202ba2abad4a4707f2a2462795 https://conda.anaconda.org/conda-forge/linux-64/fmt-11.0.2-h434a139_0.conda#995f7e13598497691c1dc476d889bc04 https://conda.anaconda.org/conda-forge/linux-64/freetype-2.12.1-h267a509_2.conda#9ae35c3d96db2c94ce0cef86efdfa2cb -https://conda.anaconda.org/conda-forge/linux-64/gcc_impl_linux-64-14.1.0-h3c94d91_1.conda#4e32ec060bf4a30c6fff81a920dc0ec9 +https://conda.anaconda.org/conda-forge/linux-64/gcc_impl_linux-64-14.2.0-h6b349bd_1.conda#0551d01d65027359bf011c049f9c6401 https://conda.anaconda.org/conda-forge/linux-64/geos-3.12.1-h59595ed_0.conda#8c0f4f71f5a59ceb0c6fa9f51501066d https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1 https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h59595ed_1003.conda#f87c7b7c2cb45f323ffbce941c78ab7c @@ -94,7 +94,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libabseil-20240116.2-cxx17_he020 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.3-h59595ed_0.conda#5e97e271911b8b2001a8b71860c32faa https://conda.anaconda.org/conda-forge/linux-64/libcrc32c-1.1.2-h9c3ff4c_0.tar.bz2#c965a5aa0d5c1c37ffc62dff36e28400 https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.1.0-h69a702a_1.conda#16cec94c5992d7f42ae3f9fa8b25df8d +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.2.0-h69a702a_1.conda#0a7f4cd238267c88e5d69f7826a407eb https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a https://conda.anaconda.org/conda-forge/linux-64/libzip-1.11.1-hf83b1b0_0.conda#e8536ec89df2aec5f65fefcf4ccd58ba https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 @@ -114,12 +114,12 @@ https://conda.anaconda.org/conda-forge/linux-64/aws-c-event-stream-0.4.3-h29ce20 https://conda.anaconda.org/conda-forge/linux-64/aws-c-http-0.8.9-h5e77a74_0.conda#d7714013c40363f45850a25113e2cb05 https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.6-hef167b5_0.conda#54fe76ab3d0189acaef95156874db7f9 https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.2-h14ed4e7_0.conda#0f69b688f52ff6da70bccb7ff7001d1d -https://conda.anaconda.org/conda-forge/linux-64/gfortran_impl_linux-64-14.1.0-he4a1faa_1.conda#0ae35a9298e2475dc877da9adaa8e490 +https://conda.anaconda.org/conda-forge/linux-64/gfortran_impl_linux-64-14.2.0-hc73f493_1.conda#131a59b3bb1dbbfc63ec0f21eb0e8c65 https://conda.anaconda.org/conda-forge/linux-64/glpk-5.0-h445213a_0.tar.bz2#efc4b0c33bdf47312ad5a8a0587fa653 -https://conda.anaconda.org/conda-forge/linux-64/gxx_impl_linux-64-14.1.0-h8d00ecb_1.conda#6ae4069622b29253444c3326613a8e1a +https://conda.anaconda.org/conda-forge/linux-64/gxx_impl_linux-64-14.2.0-h2c03514_1.conda#41664acd4c99ef4d192e12950ff68ca6 https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368 https://conda.anaconda.org/conda-forge/linux-64/libgit2-1.8.1-he8d1d4c_1.conda#febd0520afc041dd938acdce0f26d71b -https://conda.anaconda.org/conda-forge/linux-64/libglib-2.82.1-h2ff4ddf_0.conda#47a2209fa0df11797df0b767d1de1275 +https://conda.anaconda.org/conda-forge/linux-64/libglib-2.82.1-h2ff4ddf_1.conda#23b2601708f7fd71ceb52b4da41cdd66 https://conda.anaconda.org/conda-forge/linux-64/libkml-1.3.0-hf539b9f_1021.conda#e8c7620cc49de0c6a2349b6dd6e39beb https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.27-pthreads_hac2b453_1.conda#ae05ece66d3924ac3d48b4aa3fa96cec https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-4.25.3-hd5b35b9_1.conda#06def97690ef90781a91b786cb48a0a9 @@ -150,8 +150,8 @@ https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-hebfffa5_3.conda#fc https://conda.anaconda.org/conda-forge/noarch/certifi-2024.8.30-pyhd8ed1ab_0.conda#12f7d00853807b0531775e9be891cb11 https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.0-pyhd8ed1ab_0.conda#a374efa97290b8799046df7c5ca17164 https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-unix_pyh707e725_0.conda#f3ad426304898027fc619827ff428eca -https://conda.anaconda.org/conda-forge/noarch/cloudpickle-3.0.0-pyhd8ed1ab_0.conda#753d29fe41bb881e4b9c004f0abf973f -https://conda.anaconda.org/conda-forge/linux-64/debugpy-1.8.6-py39hf88036b_0.conda#feb72023bbd7a41e029d738e37a981e3 +https://conda.anaconda.org/conda-forge/noarch/cloudpickle-3.1.0-pyhd8ed1ab_1.conda#c88ca2bb7099167912e3b26463fff079 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