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Include a genome reference in the repository for tests #9

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iainrb opened this issue Aug 12, 2019 · 1 comment
Open

Include a genome reference in the repository for tests #9

iainrb opened this issue Aug 12, 2019 · 1 comment
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iainrb commented Aug 12, 2019

samtools stats might allow you to use just one chromosome in the fasta file. If you pick one of the runt chromosomes (outside of chr1-22, X), it would add less than 1MB to the repo.

Originally posted by @slazicoicr in https://github.com/_render_node/MDIzOlB1bGxSZXF1ZXN0UmV2aWV3VGhyZWFkMTkyMjc3NTU2OnYy/pull_request_review_threads/discussion
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iainrb commented Aug 12, 2019

Current solution is external dependency on one of two default hard-coded reference paths. See:
614b1dc

@iainrb iainrb self-assigned this Aug 12, 2019
@iainrb iainrb added the enhancement New feature or request label Aug 12, 2019
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