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BIA plates fail to render in vizarr #274

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joshmoore opened this issue Nov 22, 2024 · 0 comments
Open

BIA plates fail to render in vizarr #274

joshmoore opened this issue Nov 22, 2024 · 0 comments

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@joshmoore
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Opening this here as a follow on to #256 but the fix will likely either need to live on the BIA side or in vizarr:

opening Plates in vizarr often doesn't work because of the trailing /0 as it's expecting bioformats2raw format.
E.g https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c.html shows nothing, and when you open in vizarr you get:
https://hms-dbmi.github.io/vizarr/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD847/02fb729e-803a-4c2e-b40c-cf58d839567c/02fb729e-803a-4c2e-b40c-cf58d839567c.zarr/0 which looks broken.
You need to remove the trailing /0 before it's viewable.

cc: @manzt @kbab @will-moore @matthewh-ebi

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