From 5bfe30662f5b9997ba069ee648e16ebedba9bdc8 Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 13:59:51 +0100 Subject: [PATCH 1/6] Add _posts/2024-08-15-omero-5-6-13.md --- _posts/2024-08-15-omero-5-6-13.md | 40 +++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 _posts/2024-08-15-omero-5-6-13.md diff --git a/_posts/2024-08-15-omero-5-6-13.md b/_posts/2024-08-15-omero-5-6-13.md new file mode 100644 index 000000000..eca9d69b7 --- /dev/null +++ b/_posts/2024-08-15-omero-5-6-13.md @@ -0,0 +1,40 @@ +--- +layout: post +title: Release of OMERO.server 5.6.13 +intro-blurb: The OME team is pleased to announce the release of OMERO.server 5.6.13 +--- + +Today we are releasing OMERO.server 5.6.13 which includes: + +- This release reverts a change to the build process introduced in 5.6.12 that resulted in +unused copies of old jars being included in the release. No other changes have been +made to the software. + +**Note:** This upgrade will not invalidate the Bio-Formats Memoizer cache. Please +see the upgrade guide for further information. + +### Installing the Software: + +For full details of the changes included in the OMERO 5.6 series see the +[OMERO 5.6.0]({{ site.baseurl }}/2020/01/15/omero-5-6-0.html) release +announcement. Note that the present [list of supported versions](https://omero.readthedocs.io/en/v5.6.11/sysadmins/version-requirements.html) changed in the meantime. Full documentation for this release is available +under . + +This release has been tested with +[OMERO.py 5.19.4](https://pypi.org/project/omero-py/5.19.4/) and +[OMERO.web 5.27.0](https://pypi.org/project/omero-web/5.27.0/). We +recommend that you upgrade OMERO.py and OMERO.web accordingly on your deployments. + +Official Docker images are available as usual on Docker Hub with either +the latest or the 5.6 tag. Both Docker images have been upgraded to Rocky Linux 9: + +* +* + + +You are invited to discuss this announcement on +[the image.sc forum](https://forum.image.sc/tags/c/data-management/omero). + +All the best with your upgrades, + +The OME Team From 53b53190293bfdb3e1d067d88b0bc459ef4cd0d8 Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 14:01:18 +0100 Subject: [PATCH 2/6] Bump omero to 5.6.13 in _config.yml --- _config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_config.yml b/_config.yml index bb1099d71..9a14b578c 100644 --- a/_config.yml +++ b/_config.yml @@ -38,7 +38,7 @@ bf: version: 7.3.1 omero: - version: 5.6.12 + version: 5.6.13 majorversion: 5.6 insight: version: 5.8.4 From 675525e172a83ad802750549d8e0aca7b00484e2 Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 14:12:45 +0100 Subject: [PATCH 3/6] Update omero/downloads/index.html link omero 5-6-13 release post --- omero/downloads/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/omero/downloads/index.html b/omero/downloads/index.html index 6cbf949b0..29c715548 100644 --- a/omero/downloads/index.html +++ b/omero/downloads/index.html @@ -8,7 +8,7 @@

OMERO {{ site.omero.majorversion }} Downloads

- Read the Release Announcement + Read the Release Announcement Read the Docs
From 0dc9bd11232aa56fcc28a318294d32b4beb7683c Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 14:45:17 +0100 Subject: [PATCH 4/6] Clarify memoizer cache invalid if pre 0MERO 5.6.11 --- _posts/2024-08-15-omero-5-6-13.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_posts/2024-08-15-omero-5-6-13.md b/_posts/2024-08-15-omero-5-6-13.md index eca9d69b7..1d154b08e 100644 --- a/_posts/2024-08-15-omero-5-6-13.md +++ b/_posts/2024-08-15-omero-5-6-13.md @@ -10,8 +10,8 @@ Today we are releasing OMERO.server 5.6.13 which includes: unused copies of old jars being included in the release. No other changes have been made to the software. -**Note:** This upgrade will not invalidate the Bio-Formats Memoizer cache. Please -see the upgrade guide for further information. +**Note:** This upgrade will not invalidate the Bio-Formats Memoizer cache if you updating from +OMERO 5.6.11 or later. Please see the upgrade guide for further information. ### Installing the Software: From 74cb15a343f701c8323dc22e2e03b5b1ed5aea8a Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 14:48:28 +0100 Subject: [PATCH 5/6] Typo fix --- _posts/2024-08-15-omero-5-6-13.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_posts/2024-08-15-omero-5-6-13.md b/_posts/2024-08-15-omero-5-6-13.md index 1d154b08e..6ebd551bd 100644 --- a/_posts/2024-08-15-omero-5-6-13.md +++ b/_posts/2024-08-15-omero-5-6-13.md @@ -10,8 +10,8 @@ Today we are releasing OMERO.server 5.6.13 which includes: unused copies of old jars being included in the release. No other changes have been made to the software. -**Note:** This upgrade will not invalidate the Bio-Formats Memoizer cache if you updating from -OMERO 5.6.11 or later. Please see the upgrade guide for further information. +**Note:** This upgrade will not invalidate the Bio-Formats Memoizer cache if you are updating +from OMERO 5.6.11 or later. Please see the upgrade guide for further information. ### Installing the Software: From dfbf2224a5ead7c88ea44181a921438f67a99670 Mon Sep 17 00:00:00 2001 From: William Moore Date: Thu, 15 Aug 2024 14:54:14 +0100 Subject: [PATCH 6/6] Add www.icr.ac.uk/ to --ignore-urls in build.sh --- build.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/build.sh b/build.sh index e15d5ffa4..c1c6ee6c6 100755 --- a/build.sh +++ b/build.sh @@ -8,7 +8,7 @@ docker pull jekyll/builder:pages docker run --rm -v $PWD:/srv/jekyll -eJEKYLL_UID=$UID jekyll/builder:pages jekyll build --config _config.yml,_prod.yml # Report 4xx status codes except 429 errors (Too Many Requests) # typically sent by GitHub while linkchecking the downloads -docker run --rm -v $(pwd)/_site:/site jekyll/builder:pages /usr/gem/bin/htmlproofer /site --only_4xx --ignore-status-codes "429" --ignore-files "/site/minutes/,/minutes/,/site/2014/,/site/2018/,/site/citing-ome/,/site/teams/,/site/about/" --ignore-urls "/medium.com/pangeo/,/java.com/en/download/help/java_6.html/,/columbia.edu/,/eurobioimaging.eu/,/github.com/openmicroscopy/openmicroscopy/commit/,/figure.openmicroscopy.org/demo/,/loci.wisc.edu/,/twitter.com/,/monash.edu/,/micronoxford.com/,/upf.edu/,/scientifica.uk.com/,/uk1s3.embassy.ebi.ac.uk/,/biorxiv.org/,/openmicroscopy.org/events/ome-community-meeting-2024/,/meded.hms.harvard.edu/,/loc.gov/,/royalsocietypublishing.org/,/science.1082602/,/www.softwarecollections.org/" --no-enforce-https --allow-missing-href --typhoeus='{"headers" : {"User-Agent": "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Brave Chrome/91.0.4472.164 Safari/537.36"}}' +docker run --rm -v $(pwd)/_site:/site jekyll/builder:pages /usr/gem/bin/htmlproofer /site --only_4xx --ignore-status-codes "429" --ignore-files "/site/minutes/,/minutes/,/site/2014/,/site/2018/,/site/citing-ome/,/site/teams/,/site/about/" --ignore-urls "/www.icr.ac.uk/,/medium.com/pangeo/,/java.com/en/download/help/java_6.html/,/columbia.edu/,/eurobioimaging.eu/,/github.com/openmicroscopy/openmicroscopy/commit/,/figure.openmicroscopy.org/demo/,/loci.wisc.edu/,/twitter.com/,/monash.edu/,/micronoxford.com/,/upf.edu/,/scientifica.uk.com/,/uk1s3.embassy.ebi.ac.uk/,/biorxiv.org/,/openmicroscopy.org/events/ome-community-meeting-2024/,/meded.hms.harvard.edu/,/loc.gov/,/royalsocietypublishing.org/,/science.1082602/,/www.softwarecollections.org/" --no-enforce-https --allow-missing-href --typhoeus='{"headers" : {"User-Agent": "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Brave Chrome/91.0.4472.164 Safari/537.36"}}' # Test file existence echo "Checking Schemas existence"