diff --git a/docs/index.html b/docs/index.html index 55ed88aa6..4d2763b9c 100644 --- a/docs/index.html +++ b/docs/index.html @@ -14,7 +14,7 @@

Documentation


- + diff --git a/omero/developers/index.html b/omero/developers/index.html index c48454885..4e64ffd72 100644 --- a/omero/developers/index.html +++ b/omero/developers/index.html @@ -39,7 +39,7 @@

Open Source

Public API

Work with your data in Python, Java, MATLAB and C++.

- View Developer Guides + View Developer Guides
@@ -48,7 +48,7 @@

Public API

OMERO.web

Use the OMERO.web framework to build web applications for OMERO.

- View Developer Guide + View Developer Guide OMERO apps
OMERO feature
@@ -56,7 +56,7 @@

OMERO.web

OMERO clients

Develop Blitz clients that use the API and the Ice remoting framework.

- View Developer Guide + View Developer Guide
@@ -65,13 +65,13 @@

OMERO clients

OMERO.cli

Use the CLI to work with OMERO objects and write plugins.

- View Developer Guide + View Developer Guide
OMERO feature

Scripting Service

Write Python scripts to add functionality to the OMERO.server. Share your scripts with the community.

- View Developer Guide + View Developer Guide
@@ -80,14 +80,14 @@

Scripting Service

Analysis

Save your analysis results to OMERO.server or use OMERO.tables to store columnar data.

- View Developer Guide + View Developer Guide Learn more about analysis integrations
OMERO feature

OMERO.server

Extend the OMERO.server by writing your own services or using the OMERO.grid infrastructure to manage your own processes.

- View Developer Guide + View Developer Guide
diff --git a/omero/downloads/index.html b/omero/downloads/index.html index 2e34244dd..7d3923f06 100644 --- a/omero/downloads/index.html +++ b/omero/downloads/index.html @@ -93,7 +93,7 @@
omero_ij-{{ site.omero.insight.version }}-all.jar
OMERO feature
MATLAB
OMERO.matlab-{{ site.omero.matlab.version }}.zip
-

View instructions at OMERO MATLAB language bindings.

+

View instructions at OMERO MATLAB language bindings.

Download (54 MB) @@ -104,7 +104,7 @@
OMERO.matlab-{{ site.omero.matlab.version }}.zip
OMERO feature
Server (Ice 3.6)
OMERO.server-{{ site.omero.version }}-ice36.zip
-

View installation guides in System Administrator documentation.

+

View installation guides in System Administrator documentation.

Download (260 MB) @@ -136,7 +136,7 @@

OMERO Java

OMERO feature
Java (Ice 3.6)
OMERO.java-{{ site.omero.version }}-ice36.zip
-

The OMERO Java documentation is available to read on the web here.

+

The OMERO Java documentation is available to read on the web here.

Download (125 MB) diff --git a/omero/features/analyze/index.html b/omero/features/analyze/index.html index ad14368ef..e662cfdcf 100644 --- a/omero/features/analyze/index.html +++ b/omero/features/analyze/index.html @@ -58,7 +58,7 @@

ImageJ/Fiji plugin

Scripting service

Write scripts to add functionality to OMERO.server and share them with the community.

- View developer guide + View developer guide View movie
@@ -94,7 +94,7 @@

R and OMERO

Tabular Data support

HDF-based storage of measurement results with an API for exporting to Excel using OMERO.tables.

- View developer guide + View developer guide
OMERO feature diff --git a/omero/features/export/index.html b/omero/features/export/index.html index ceba698f8..484cca241 100644 --- a/omero/features/export/index.html +++ b/omero/features/export/index.html @@ -30,14 +30,14 @@

Export images

Export multi-image filesets

Bio-Formats allows OMERO to recognize filesets and treat them as one unit.

- View developer guide + View developer guide
OMERO feature

Export HCS data

OMERO.server can be configured to allow plate data to be downloaded.

- View sysadmin guide + View sysadmin guide
diff --git a/omero/features/import/index.html b/omero/features/import/index.html index 1c9d64bd8..ee63bd02e 100644 --- a/omero/features/import/index.html +++ b/omero/features/import/index.html @@ -36,7 +36,7 @@

Supported file formats

OMERO feature

Command Line Import

Use the command line to import images into OMERO.

- View CLI guide + View CLI guide View movies
@@ -44,14 +44,14 @@

Command Line Import

Improved performance

Stream-lined backend import process uploads large datasets such as HCS and SPIM much faster.

- View CLI guide + View CLI guide
OMERO feature

OMERO.dropbox

Allows automatic import from a defined directory of all supported file formats.

- View sysadmin guide + View sysadmin guide
OMERO feature @@ -60,14 +60,14 @@

Import-For

users, which will then be owned by that other user.

View user guide - View CLI guide + View CLI guide
OMERO feature

Original file formats

OMERO.server now uploads, exports, and stores files in their original file format.

- View developer guide + View developer guide
OMERO feature diff --git a/omero/features/learning/index.html b/omero/features/learning/index.html index 1a7031dc1..318e39639 100644 --- a/omero/features/learning/index.html +++ b/omero/features/learning/index.html @@ -23,13 +23,13 @@

OMERO as a learning platform

OMERO feature

Customize clients

Customize landing pages, menus and user access to data

- View sysadmin guide + View sysadmin guide
OMERO feature

Public access

Configure OMERO to host data publicly.

- View sysadmin guide + View sysadmin guide
diff --git a/omero/features/organize/index.html b/omero/features/organize/index.html index 2438fdd23..7f321f0eb 100644 --- a/omero/features/organize/index.html +++ b/omero/features/organize/index.html @@ -24,7 +24,7 @@

Managing your data in OMERO

Manage and organize

Manage, organize and delete images within Projects and Datasets.

View user guide - View CLI guides + View CLI guides
OMERO feature @@ -44,7 +44,7 @@

Browse and filter images

Annotate data

Add descriptions, comments, file attachments, tags or ratings.

View user guide - View CLI guides + View CLI guides
OMERO feature diff --git a/omero/features/publish/index.html b/omero/features/publish/index.html index a61e07a1c..f4e6859ae 100644 --- a/omero/features/publish/index.html +++ b/omero/features/publish/index.html @@ -41,7 +41,7 @@

Using a public group

OMERO.web can allow public access to selected data without the need to log in.

View user guide - View administrator guide + View administrator guide
OMERO feature @@ -49,7 +49,7 @@

OMERO as a public repository

Configure OMERO.web or use another app to create a customized front end for your OMERO installation.

Explore examples - View administrator guides + View administrator guides
diff --git a/omero/features/share/index.html b/omero/features/share/index.html index 33513a662..9f58a25d7 100644 --- a/omero/features/share/index.html +++ b/omero/features/share/index.html @@ -22,7 +22,7 @@

Sharing your data in OMERO

Permissions

Allows users to share data within groups and collaborate on their data.

View user guide - View sysadmin guide + View sysadmin guide
OMERO feature diff --git a/omero/features/utility/index.html b/omero/features/utility/index.html index 76ec260f0..f06060f18 100644 --- a/omero/features/utility/index.html +++ b/omero/features/utility/index.html @@ -24,21 +24,21 @@

Manage users & groups

Administrators can add and manage users and groups with the admin tools.

View OMERO.web admin guide - View OMERO.cli guide + View OMERO.cli guide
OMERO feature

LDAP support

The Lightweight Directory Access Protocol (LDAP) support.

- View sysadmin guide + View sysadmin guide
OMERO feature

Command Line Interface

Many OMERO functions can be accessed from the command line.

- View sysadmin guide + View sysadmin guide
OMERO feature @@ -58,7 +58,7 @@

Personalize

OMERO feature

OMERO.mail

Sysadmins can use a GUI to email users from the server.

- View sysadmin guide + View sysadmin guide
diff --git a/omero/index.html b/omero/index.html index 74ea8df1e..1122a1bc5 100644 --- a/omero/index.html +++ b/omero/index.html @@ -73,7 +73,7 @@

Download Version {{ site.omero.majorversion }} - Read the Docs + Read the Docs Start with OMERO at your Institution diff --git a/omero/institution/docs.html b/omero/institution/docs.html index 1f01860da..628ba7861 100644 --- a/omero/institution/docs.html +++ b/omero/institution/docs.html @@ -23,7 +23,7 @@

Introductory guide
for facility managers
- +
@@ -149,7 +149,7 @@

System requirements

Groups and permissions system

Getting to grips with the user roles, groups and permissions in OMERO is a great way to support a range of privacy and collaboration scenarios. This in-depth guide gives you all the information you need.

-
Read the Guide
+
Read the Guide
@@ -159,7 +159,7 @@

Groups and permissions system

Installing OMERO.server

How to guides are provided for installing the server on a range of supported platforms and there is also information for getting your data repository, PostgreSQL database and OMERO.web deployment up and running.

-
Read the Guide
+
Read the Guide
@@ -171,7 +171,7 @@

Installing OMERO.server

Advanced import scenarios

This is an overview of the advantages and disadvantages of all the available methods for importing data so you can choose the best method for your facility.

-
Read the Guide
+
Read the Guide
@@ -181,7 +181,7 @@

Advanced import scenarios

Server security and firewalls

OMERO is built with security in mind. This guide takes you through our practices and how to ensure your installation is as secure as possible.

-
Read the Guide
+
Read the Guide
diff --git a/omero/institution/index.html b/omero/institution/index.html index 3a7cedd75..0c9d7a993 100644 --- a/omero/institution/index.html +++ b/omero/institution/index.html @@ -22,7 +22,7 @@

OMERO is designed to be an institutional da securely stored and managed, using group permissions and user roles to allow controlled access tailored to your institution. From private repositories for sensitive data - to hosting public data for your website and latest publications, + to hosting public data for your website and latest publications, the permissions model is designed to meet the range of researchers’ needs. OMERO is tried and tested in hundreds of institutions world-wide, with extensive installation @@ -56,7 +56,7 @@

Supported File Formats

Permissions

OMERO permissions functionality allows users to share data within groups of scientists and collaborate on their data.

- View Sysadmin Guide + View Sysadmin Guide View Facility Manager Guide
@@ -84,14 +84,14 @@

Manage Users & Groups

LDAP Support

Lightweight Directory Access Protocol (LDAP) is supported to allow existing institutional authentication services to be used for OMERO.

- View Sysadmin Guide + View Sysadmin Guide
OMERO feature

Command Line

The Command Line Interface enables a range of OMERO functions to be performed efficiently on single or batches of images.

- View User Guide - View Sysadmin Guide + View User Guide + View Sysadmin Guide
@@ -106,7 +106,7 @@

File Integrity Reports

DropBox

Full-fledged “DropBox" allows automatic import from a defined directory of all supported file formats.

- View Sysadmin Guide + View Sysadmin Guide
diff --git a/omero/scientists/docs.html b/omero/scientists/docs.html index 81c3a3566..f49abf192 100644 --- a/omero/scientists/docs.html +++ b/omero/scientists/docs.html @@ -24,7 +24,7 @@
User guides
- +
OMERO Documentation