From 7e83bd2351e7f282f01553729dfac19f72e03985 Mon Sep 17 00:00:00 2001 From: pwalczysko Date: Tue, 12 Nov 2024 16:56:45 +0000 Subject: [PATCH 1/4] Add workshops Kobe and Brno --- events/index.html | 12 ++++ events/workshops-brno-december-2024.html | 43 ++++++++++++ events/workshops-kobe-november-2024.html | 84 ++++++++++++++++++++++++ 3 files changed, 139 insertions(+) create mode 100644 events/workshops-brno-december-2024.html create mode 100644 events/workshops-kobe-november-2024.html diff --git a/events/index.html b/events/index.html index c21ee974a..ec6a55f28 100644 --- a/events/index.html +++ b/events/index.html @@ -9,6 +9,18 @@
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December 6 2024
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OMERO workshop, CEITEC, Brno

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In-person workshop on imaging workflows in OMERO.

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November 4 and 6 2024
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OMERO workshops, RIKEN Institute, Kobe

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In-person workshops on installation and usage of OMERO.

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June 13-14 2024

OMERO workshop, Smithsonian Institute, Panama

diff --git a/events/workshops-brno-december-2024.html b/events/workshops-brno-december-2024.html new file mode 100644 index 000000000..f2fc57db1 --- /dev/null +++ b/events/workshops-brno-december-2024.html @@ -0,0 +1,43 @@ +--- +layout: news-events +filename: events +title: December 2024 OME workshop +main-blurb: The OME Team gives a workshop on OMERO at the CEITEC CELLIM Brno (Czech Republic). +--- +
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Organisers: CEITEC CELLIM Brno, Czech Republic

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Location: CEITEC, Brno, Czech Republic +

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Workshop: OMERO Workshop

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Dates: 6 December 2024

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OMERO, a component of OME, is a software platform for image data management and analysis which will be presented in this workshop. + Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO will be shown.

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+ Further, the emphasis will be given on the popular OMERO.figure application. +

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Resources available: TBD

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diff --git a/events/workshops-kobe-november-2024.html b/events/workshops-kobe-november-2024.html new file mode 100644 index 000000000..db05a3ffb --- /dev/null +++ b/events/workshops-kobe-november-2024.html @@ -0,0 +1,84 @@ +--- +layout: news-events +filename: events +title: June 2024 OME workshop +main-blurb: The OME Team gave 3 workshops on OMERO at RIKEN Institute (Kobe, Japan). +--- +
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Organisers: foundingGIDE

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Location: RIKEN Institute, Kobe +

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Workshop 1: OMERO installation and configuration +

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Date: 4th November 2024

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Duration: 2.5 hours

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Workshop 2: OMERO imaging workflows +

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Date: 4th November 2024

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Duration: 2.5 hours

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Workshop 3: Advanced Analysis with OMERO +

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Date: 6th November 2024

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Duration: 5 hours

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OMERO, a component of OME, is a software platform for image data management and analysis. +

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+ Workshop 1: For the first time, the installation of OMERO.server and OMERO.web was shown in a workshop. The participants installed the components of the OMERO software in Ubuntu 22.04 Virtual Machines and learned how to install and configure the applications for OMERO.web, such as OMERO.iviewer. +

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+ Workshop 2: Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were shown. +

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+ Workshop 3: Advanced analysis using OMERO API was shown. The emphasis was on the OMERO plugin for Fiji, but also the connection between ilastik and OMERO was explored. +

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Resources available: Presentations & walkthroughs

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From 781ff2921c535f94de0ba600e5d35d234120dc7d Mon Sep 17 00:00:00 2001 From: pwalczysko Date: Wed, 13 Nov 2024 11:09:58 +0000 Subject: [PATCH 2/4] Replace Wolstencroft link with a working link --- _data/ome2024.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_data/ome2024.json b/_data/ome2024.json index 1ecfb4345..f6c570f6d 100644 --- a/_data/ome2024.json +++ b/_data/ome2024.json @@ -218,7 +218,7 @@ "@type": "Organization", "name": "Leiden University" }, - "sameAs": "https://www.universiteitleiden.nl/en/staffmembers/katy-wolstencroft#tab-1" + "sameAs": "https://liacs.leidenuniv.nl/~wolstencroftkj/" } ] }, @@ -730,7 +730,7 @@ "@type": "Organization", "name": "Leiden University" }, - "sameAs": "https://www.universiteitleiden.nl/en/staffmembers/katy-wolstencroft#tab-1" + "sameAs": "https://liacs.leidenuniv.nl/~wolstencroftkj/" }, { "@type": "Person", From 5336e4b546af6c21ab803150ddc7f19336c19152 Mon Sep 17 00:00:00 2001 From: pwalczysko Date: Wed, 13 Nov 2024 11:18:52 +0000 Subject: [PATCH 3/4] Add future star for Brno --- events/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/events/index.html b/events/index.html index ec6a55f28..1c2c826c2 100644 --- a/events/index.html +++ b/events/index.html @@ -10,7 +10,7 @@
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December 6 2024
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December 6 2024

OMERO workshop, CEITEC, Brno

In-person workshop on imaging workflows in OMERO.

From 81bf29bd123541a9327872dfedaebddf40d1aa72 Mon Sep 17 00:00:00 2001 From: pwalczysko Date: Wed, 13 Nov 2024 12:59:02 +0000 Subject: [PATCH 4/4] Add EastBio as well --- events/index.html | 6 +++ ...workshop-eastbio-dundee-december-2024.html | 49 +++++++++++++++++++ 2 files changed, 55 insertions(+) create mode 100644 events/omero-workshop-eastbio-dundee-december-2024.html diff --git a/events/index.html b/events/index.html index 1c2c826c2..381aa779c 100644 --- a/events/index.html +++ b/events/index.html @@ -15,6 +15,12 @@

OMERO workshop, CEITEC, Brno In-person workshop on imaging workflows in OMERO.

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December 4 2024
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OMERO Workshop, EastBio, Dundee

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In-person 1 hour demo/workshop on how to use OMERO.

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November 4 and 6 2024

OMERO workshops, RIKEN Institute, Kobe

diff --git a/events/omero-workshop-eastbio-dundee-december-2024.html b/events/omero-workshop-eastbio-dundee-december-2024.html new file mode 100644 index 000000000..f0acf4c2f --- /dev/null +++ b/events/omero-workshop-eastbio-dundee-december-2024.html @@ -0,0 +1,49 @@ +--- +layout: news-events +filename: events +title: December 2024 OMERO EastBio workshop +main-blurb: 1-hour in-person demo/workshop on how to use OMERO. +--- +
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The OMERO demo/workshop is a part of a whole-day course for Postdoctoral Students.

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Organiser: EastBio

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Location: Dundee, UK

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Date: 4th December 2024

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Duration: approx 1 hour

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The Open Microscopy Environment (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. We support more than 150 image data formats across many imaging modalities including medical imaging, high-content screening and whole-slide imaging. + We support and visualize multi-channel 3D timelapse images. + + OMERO, a component of OME, is a software platform for image data management and analysis which is presented in this course. + Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO is shown. +

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+ The workshop focused on basics of OMERO and does not assume any programming skills. +

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Resources available: TBD +

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