diff --git a/_config.yml b/_config.yml index f45ae674e..c70938da4 100644 --- a/_config.yml +++ b/_config.yml @@ -35,7 +35,7 @@ defaults: future: true bf: - version: 7.0.0 + version: 7.0.1 omero: version: 5.6.9 diff --git a/_posts/2023-10-16-bio-formats-7-0-1.md b/_posts/2023-10-16-bio-formats-7-0-1.md new file mode 100644 index 000000000..51a6f042c --- /dev/null +++ b/_posts/2023-10-16-bio-formats-7-0-1.md @@ -0,0 +1,73 @@ +--- +layout: post +title: Release of Bio-Formats 7.0.1 +intro-blurb: The OME team is pleased to announce the release of Bio-Formats 7.0.1 +--- + +Today we are releasing Bio-Formats 7.0.1 which includes a number of format improvements. + +The full list of changes included in this release are as follows: + + +File format fixes and improvements: + +* Amersham Biosciences Gel + - improved format detection + +* Aperio SVS + - fixed a NullPointerException when attempting to read the magnification metadata + - physical sizes and positions are now calculated for full resolution label and macro images + - fixed a regression from Bio-Formats 6.8.0 which saw label and macro images incorrectly indexed + +* DICOM + - the DICOM writer will now throw an exception if the provided tiles don't match the + expected tile size + +* Gatan DM3 + - fixed a StringIndexOutOfBoundsException when parsing acquisition mode + +* Hamamatsu NDPI + - corrected for potential integer overflow in stored restart marker tag + +* IVision + - improved the version and data type checks in isThisType + +* Leica LIF + - improved the exception handling if no images are found + +* Olympus OIR + - fixed issue with XML block reading that resulted in missing pixel blocks + +* OME-TIFF + - reader will now fail fast and throw a FormatException if an invalid file is found + +* TIFF + - a FormatException is now thrown for unsupported 64-bit int data + - for all TIFF based formats the IFD entry offset is now checked before seeking + +* TillVision + - improved metadata parsing and detection of .pst files + +* Ventana + - fixed tile arithmetic for smallest resolutions + +* Zeiss CZI + - unified channel color parsing so that retrieving lookup tables now allows RGB and ARGB colors + +Bio-Formats improvements: + +* URLHandle will fall back to resetting stream if resetting to a mark fails +* an exception will now be thrown if the TurboJPEG library fails to load (thanks to Can Gokhan Dogan) +* fixed a Bio-Formats plugin bug when attempting to export a file after reducing the range of channels +* reviewed and updated a number of file headers +* updated GitHub Actions from checkout v2 to v3 + +Component updates: + +* `ome-common` was upgraded to 6.0.20 + +Documentation improvements: + +* fixed a number of broken external links +* updated the link to OME Model documentation +* migrated readthedocs configuration to version 2 diff --git a/bio-formats/downloads/index.html b/bio-formats/downloads/index.html index 633c16b0f..6e36b3123 100644 --- a/bio-formats/downloads/index.html +++ b/bio-formats/downloads/index.html @@ -6,7 +6,7 @@