You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi!
I ran into an issue today with the to_bigwig function and it turned out it was the way I provided chromsizes. The two issues were that chromsizes wasn't indexed by "chrom" and that I included a "name" column which I was used to from other open2c tools such as cooltools (termed "viewFrames", I think?) and which would cause the function to fail with error messages like invalid unsigned integer: "chr2L" which were not very clear to me.
I think it would be helpful if (1) there were clearer error messages describing these mistakes and (2) more flexibility in the data formats provided and/or a more consistent data format to use such as viewFrames.
Thanks!
The text was updated successfully, but these errors were encountered:
Hi!
I ran into an issue today with the
to_bigwig
function and it turned out it was the way I provided chromsizes. The two issues were that chromsizes wasn't indexed by "chrom" and that I included a "name" column which I was used to from other open2c tools such as cooltools (termed "viewFrames", I think?) and which would cause the function to fail with error messages like invalid unsigned integer: "chr2L" which were not very clear to me.I think it would be helpful if (1) there were clearer error messages describing these mistakes and (2) more flexibility in the data formats provided and/or a more consistent data format to use such as viewFrames.
Thanks!
The text was updated successfully, but these errors were encountered: