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This is on the production card, and the USB interface worked when we tested it, but definitely this double termination should not be there. If we ever have another BOM change on there, I will add this on, thanks for the great catch!
Ref. schematic R4006-G0001-03-SC-REV02.pdf
If using the USB interface (FT432, sht. 24), the FPGA JTAG signals are double-terminated by resistors shown at sht. 24, zone B11:
and sht. 10, zone J4.
by way of the mux'ing shown on sht. 24 "JTAG/SPI_MASTER_SEL".
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