Merge pull request #21 from openvar/develop

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openvar · Mar 15, 2021 · cbd8fb1 · cbd8fb1
2 parents ca4af3e + b795024
commit cbd8fb1
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Showing 4 changed files with 267 additions and 1,315 deletions.
diff --git a/VariantFormatter/formatter.py b/VariantFormatter/formatter.py
@@ -339,9 +339,14 @@ def gap_checker(hgvs_transcript, hgvs_genomic, un_norm_hgvs_genomic, genome_buil
     hgvs_version = vfo.hgvsVersion
 
     # Check for gapping
-    checked = gapGenes.compensate_g_to_t(hgvs_transcript, hgvs_genomic, 
-                                        un_norm_hgvs_genomic, vm, hn, rhn, 
-                                        genome_build, hdp, hp, sf, hgvs_version, vfo)
+    checked = gapGenes.compensate_g_to_t(hgvs_transcript,
+                                         hgvs_genomic,
+                                         vm,
+                                         hn,
+                                         rhn,
+                                         genome_build,
+                                         hdp,
+                                         vfo)
 
     return checked