diff --git a/docker/VERSION b/docker/VERSION index 0ea3a94..0d91a54 100644 --- a/docker/VERSION +++ b/docker/VERSION @@ -1 +1 @@ -0.2.0 +0.3.0 diff --git a/pipeline/rna.rules b/pipeline/rna.rules index 0f1dc3d..723c8c4 100644 --- a/pipeline/rna.rules +++ b/pipeline/rna.rules @@ -45,6 +45,7 @@ if _rna_exists(): "--outSAMstrandField intronMotif " "--outSAMattributes NH HI NM MD " "--outSAMmapqUnique 60 " + "--outSAMunmapped Within " "--outFilterIntronMotifs RemoveNoncanonical " "--outSAMattrRGline ID:{wildcards.prefix} SM:'{params.rg_sm}' " "--outFileNamePrefix {params.output_dir}/{wildcards.prefix} " @@ -77,6 +78,7 @@ if _rna_exists(): "--outSAMstrandField intronMotif " "--outSAMattributes NH HI NM MD " "--outSAMmapqUnique 60 " + "--outSAMunmapped Within " "--outFilterIntronMotifs RemoveNoncanonical " "--outSAMattrRGline ID:{wildcards.prefix} SM:'{params.rg_sm}' " "--outFileNamePrefix {params.output_dir}/{wildcards.prefix} "