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    5 repositories

    • CUTAG_lib

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • scCut-Tag_2020

      Public
      Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
      R
      •9•0•0•0•Updated Mar 27, 2022Mar 27, 2022

    • vsn-pipelines

      Public
      A repository of pipelines for single-cell data in Nextflow DSL2
      Nextflow
      •
      GNU General Public License v3.0
      •34•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • cutandrun

      Public
      Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
      Nextflow
      •
      MIT License
      •50•0•0•0•Updated Mar 17, 2022Mar 17, 2022

    • PCHiC-specificity-score-analysis

      Public
      Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jun 4, 2021Jun 4, 2021