Repositories list

• AMBER

  Public
  AMBER: Assessment of Metagenome BinnERs

  benchmarkingmetagenomicsbinning+ 1biobox

  Python

  •

  GNU General Public License v3.0

  •7•28•2•0•Updated Sep 6, 2024Sep 6, 2024

• OPAL

  Public
  OPAL: Open-community Profiling Assessment tooL

  Python

  •

  Apache License 2.0

  •6•27•5•2•Updated Aug 21, 2024Aug 21, 2024

• CAMISIM

  Public
  CAMISIM: Simulating metagenomes and microbial communities

  metagenomicssimulation

  Python

  •

  Apache License 2.0

  •37•182•23•0•Updated Aug 8, 2024Aug 8, 2024

• CAMITAX

  Public
  CAMITAX: Taxon labels for microbial genomes

  Nextflow

  •

  Apache License 2.0

  •4•29•4•0•Updated Dec 14, 2023Dec 14, 2023

• second_challenge_evaluation

  Public
  Repository for codes, analyses and visualizations for the CAMI II challenges

  HTML

  •6•11•8•0•Updated Sep 4, 2023Sep 4, 2023

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated May 22, 2023May 22, 2023

• data

  Public
  Pointers to publicly available assembly, binning, and profiling results

  HTML

  •4•4•4•0•Updated Nov 5, 2021Nov 5, 2021

• file_formats

  Public
  0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

• contest_information

  Public
  File format specifications, Presentation materials and other information

  MIT License

  •1•3•4•0•Updated Nov 6, 2020Nov 6, 2020

• CamiClient

  Public
  Java

  •1•0•2•1•Updated Oct 13, 2020Oct 13, 2020

• university-email-domains

  Public
  Domains used for university-issued email addresses

  13•0•0•0•Updated May 26, 2020May 26, 2020

• BenchmarkingToolkitTutorial

  Public
  1•1•0•0•Updated Mar 6, 2020Mar 6, 2020

• docker_profiling_tools

  Public
  Stefans Collection of Dockerfiles and helper scripts for profiling tools

  Perl

  •

  GNU General Public License v3.0

  •4•2•3•0•Updated Feb 28, 2020Feb 28, 2020

• ObjectStorageWrapper

  Public
  Java

  •0•0•0•0•Updated Nov 21, 2018Nov 21, 2018

• CamiIO

  Public
  Java

  •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

• firstchallenge_evaluation

  Public
  Directory containing example result visualizations and scripts for generating figures and tables

  R

  •3•2•12•0•Updated Sep 17, 2018Sep 17, 2018

• CAMISIM-DATA

  Public
  Supplementary data for CAMISIM

  Creative Commons Attribution 4.0 International

  •0•1•1•0•Updated Jul 19, 2018Jul 19, 2018

• MetagenomeSimulationPipeline

  Public
  The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM

  0•1•0•0•Updated Mar 8, 2018Mar 8, 2018

• bbx-profiling-evaluation-dk

  Public
  Python

  •

  MIT License

  •1•1•3•0•Updated Nov 2, 2017Nov 2, 2017

• quast

  Public
  Shell

  •0•0•0•0•Updated Sep 7, 2017Sep 7, 2017

• genome_binning_evaluation

  Public
  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Aug 23, 2017Aug 23, 2017

• bbx-binning-evaluation-jd

  Public
  A biobox for CAMI binning evaluation

  Python

  •1•1•4•0•Updated Jul 19, 2017Jul 19, 2017

• quast_frc

  Public
  Genome assembly evaluation tool

  C

  •

  Other

  •78•0•0•0•Updated May 5, 2017May 5, 2017

• frc_hacking

  Public
  0•0•0•0•Updated May 4, 2017May 4, 2017

• bbx-profiling-evaluation-krona

  Public
  Perl

  •0•0•0•0•Updated Apr 23, 2017Apr 23, 2017

• cami-concoct

  Public
  Biobox of the binning tool CONCOCT for the cami challenge

  Python

  •0•1•0•0•Updated Jun 27, 2016Jun 27, 2016

• bbx-binning-evaluation-ig

  Public
  Python

  •0•0•2•0•Updated Jan 14, 2016Jan 14, 2016

• evaluation

  Public
  Evaluation tools

  Python

  •

  MIT License

  •0•0•2•0•Updated Sep 3, 2015Sep 3, 2015

• docker-camibase-profiling

  Public
  A container image to use for metagenomic community profiling programs

  Shell

  •0•0•1•0•Updated May 5, 2015May 5, 2015

• docker-camibase-binning-evaluation

  Public
  Shell

  •0•0•0•0•Updated Feb 20, 2015Feb 20, 2015