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    83 repositories

    • exdir

      Public
      Directory structure standard for experimental pipelines.
      pythonfileformatdatastorage
      Python
      •
      MIT License
      •13•72•16•6•Updated Dec 23, 2024Dec 23, 2024

    • expipe-plugin-cinpla

      Public
      Plugins for expipe command line interface
      Python
      •
      GNU General Public License v3.0
      •3•1•5•0•Updated Dec 17, 2024Dec 17, 2024

    • head-direction

      Public
      Analysis for head direction cells
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Nov 30, 2024Nov 30, 2024

    • spatial-maps

      Public
      Analysis for spatially modulated spiking activity, e.g. place cells, grid cells
      Python
      •
      GNU General Public License v3.0
      •8•16•5•0•Updated Nov 21, 2024Nov 21, 2024

    • septum-mec

      Public
      Analysis for the septum-mec project
      Jupyter Notebook
      •0•0•2•0•Updated Jun 14, 2024Jun 14, 2024

    • cinpla-base

      Public archive
      Repository to fork when you want to start a new project
      GNU General Public License v3.0
      •7•2•3•0•Updated Apr 8, 2024Apr 8, 2024

    • edNEGmodel

      Public
      An electrodiffusive neuron-extracellular-glia model with somatodendritic interactions
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • expipe

      Public
      Experiment-data management platform
      Python
      •
      GNU General Public License v3.0
      •2•8•10•1•Updated Jan 24, 2024Jan 24, 2024

    • pyopenephys

      Public
      Python reader for open ephys
      Python
      •
      GNU General Public License v3.0
      •11•6•1•0•Updated Dec 14, 2023Dec 14, 2023

    • neuronify

      Public
      An educational neural network app using the integrate-and-fire method.
      QML
      •
      GNU General Public License v3.0
      •17•54•59•0•Updated Dec 4, 2023Dec 4, 2023

    • edNEGmodel_analysis

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 17, 2023Nov 17, 2023

    • visual-stimulation

      Public
      Analysis of visual stimulation e.g. drifting gratings and stuff
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 27, 2023Jan 27, 2023

    • EDPRmodel_analysis

      Public
      Python
      •0•2•0•2•Updated Dec 27, 2022Dec 27, 2022

    • EDPRmodel

      Public
      An electrodiffusive, ion conserving Pinsky-Rinzel model with homeostatic mechanisms
      Python
      •1•3•0•0•Updated Jan 25, 2022Jan 25, 2022

    • KNPsim

      Public
      Simulator for ion concentrations using the electroneutral "Kirchoff-Nernst-Planck" (KNP) formalism in FEniCS
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Oct 7, 2021Oct 7, 2021

    • RippleNet

      Public
      Jupyter Notebook
      •
      MIT License
      •3•11•2•0•Updated Apr 4, 2021Apr 4, 2021

    • pyxona

      Public
      Python library for reading Axona files
      Python
      •
      GNU General Public License v3.0
      •2•2•9•2•Updated Mar 21, 2021Mar 21, 2021

    • spike-statistics

      Public
      Analysis of spiking stats e.g. correlogram etc
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Feb 16, 2021Feb 16, 2021

    • Drop_In

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 14, 2021Jan 14, 2021

    • Library

      Public
      Overview of books for our library
      4•4•0•1•Updated Dec 8, 2020Dec 8, 2020

    • phase-precession

      Public
      Measures for phase precession
      Python
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated Sep 11, 2020Sep 11, 2020

    • CMRO2estimation

      Public
      Code for estimating CMRO2, presented in Sætra et al. 2020.
      Python
      •0•0•0•0•Updated Sep 10, 2020Sep 10, 2020

    • MultiLinearPopulationAnalysis-MLPA

      Public
      Example code for Multi-Linear Population Analysis (MLPA), Geddes et al.
      MATLAB
      •1•2•0•0•Updated Aug 3, 2020Aug 3, 2020

    • NeuroCNN

      Public
      AGS Script
      •
      GNU General Public License v3.0
      •4•7•4•0•Updated Jun 27, 2020Jun 27, 2020

    • Skaar_et_al_2020_PLoS_Comput_Biol

      Public
      Python
      •1•1•0•0•Updated May 25, 2020May 25, 2020

    • sync-plugin

      Public
      Open Ephys plugin to generate software Sync events
      C++
      •
      GNU General Public License v3.0
      •2•0•1•0•Updated May 5, 2020May 5, 2020

    • logic-gate-plugin

      Public
      Open Ephys plugin to combine TTL signals with logic operators
      C++
      •
      GNU General Public License v3.0
      •2•0•2•1•Updated May 5, 2020May 5, 2020

    • tracking-plugin

      Public
      Open Ephys plugins for tracking experiments
      C++
      •
      GNU General Public License v3.0
      •20•10•4•0•Updated May 5, 2020May 5, 2020

    • PRmodel

      Public
      An implementation of the Pinsky-Rinzel model in Python
      Python
      •0•2•0•0•Updated Apr 30, 2020Apr 30, 2020

    • expipe-io-neuro

      Public
      Neuroscience specific converters for expipe
      Python
      •
      GNU General Public License v3.0
      •0•0•8•0•Updated Apr 27, 2020Apr 27, 2020