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    24 repositories

    • robustica

      Public
      customizable robust Independent Component Analysis (ICA)
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•11•0•0•Updated Sep 16, 2024Sep 16, 2024

    • submit_request

      Public
      How to submit requests to facility using agendo
      1•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • PROTrEIN

      Public
      Protrein EU project
      0•0•0•0•Updated Nov 24, 2023Nov 24, 2023

    • docker-centos-perlbrew

      Public archive
      Basic Docker image for running CentOS with perlbrew installed
      Dockerfile
      •3•0•1•0•Updated Feb 3, 2023Feb 3, 2023

    • ngs2017ws-docs

      Public
      NGS 2017 Post-Conference Workshop Documentation
      rna-seqnextflowngsvariant-calling
      CSS
      •1•5•0•0•Updated Jan 27, 2023Jan 27, 2023

    • ngs2016ws

      Public
      NGS 2016 post-conference workshop documentation
      CSS
      •0•2•0•0•Updated Jan 27, 2023Jan 27, 2023

    • CalliNGS-NF

      Public
      GATK RNA-Seq Variant Calling in Nextflow
      bioinformaticsgenomicsngsvariant-callingrna-seqnextflowgatk
      Nextflow
      •
      Mozilla Public License 2.0
      •55•132•12•1•Updated Dec 14, 2022Dec 14, 2022

    • pipeline_roesti

      Public
      Pipeline to analyze bacterial RNA-seq data from RNA-seq and ribo-seq (ribosome profiling) experiments.
      Python
      •0•1•1•0•Updated Jul 19, 2022Jul 19, 2022

    • fastqins

      Public
      Pipeline for transposon sequencing processing
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 30, 2022Mar 30, 2022

    • mpistat

      Public
      Toolchain for collecting and reporting on inode metadata for HPC filesystems,
      Python
      •
      GNU General Public License v3.0
      •3•5•2•2•Updated Feb 16, 2022Feb 16, 2022

    • killswitch

      Public
      Defining variants (SNPs, insertions and deletions) for a set of HiSeq samples exploring the variability in populations of M. pneumoniae transformed with a killswitch cassette
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 2, 2021Jul 2, 2021

    • Fastq2LoxDel

      Public
      Basic pipeline to extract lox-derived deletions
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 14, 2020Sep 14, 2020

    • anubis

      Public
      Python package for the analysis of tn-seq data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jul 20, 2020Jul 20, 2020

    • MetabolicPathVariationCoeff

      Public
      Code to run the randomization analysis on metabolic paths of M. pneumoniae and M. agalactiae
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 18, 2020Apr 18, 2020

    • TOPOS

      Public
      Tissue of Origin Predictor of Onco-Samples (TOPOS), a versatile machine learning classifier for various types of malignant or healthy human cells.
      Python
      •0•0•0•0•Updated Apr 9, 2020Apr 9, 2020

    • Covid19TestLab

      Public
      A set of guidelines, SoPs, methodologies, software etc. for turning a research lab with PCR and RNA expertise into an industrial scale covid-19 testing facility.
      2•1•0•0•Updated Apr 2, 2020Apr 2, 2020

    • make_tool_desc_for_multiqc

      Public
      This script gives you the version of the used tools and their reference.
      Perl
      •0•0•0•0•Updated Apr 9, 2019Apr 9, 2019

    • EOSC-Pilot

      Public
      EOSC pilot project
      Nextflow
      •
      Mozilla Public License 2.0
      •1•0•0•0•Updated Mar 3, 2019Mar 3, 2019

    • good-bionfo-2018-vc

      Public
      Good Practices Bioinfo 2018 - version control
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated May 7, 2018May 7, 2018

    • BioCoreMiscOpen

      Public
      Miscellaneous scripts
      Perl
      •0•0•0•0•Updated Mar 19, 2018Mar 19, 2018

    • gem3

      Public
      GEM Mapper (Version 3)
      0•0•0•0•Updated Sep 29, 2017Sep 29, 2017

    • ELMSeq

      Public
      Python
      •
      MIT License
      •3•0•0•0•Updated Aug 27, 2017Aug 27, 2017

    • genome.prbb.org

      Public
      Resources for generating genome.prbb.org website
      HTML
      •0•0•0•0•Updated Apr 27, 2017Apr 27, 2017

    • ngs2017-nf

      Public
      R
      •0•1•0•0•Updated Apr 5, 2017Apr 5, 2017