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@GlobalPneumoSeq Global Pneumococcal Sequencing (GPS) Project

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    4 repositories

    • gps-pipeline

      Public
      Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)
      genomicsnextflowfastqinsilicostreptococcus-pneumoniaepipeline
      Nextflow
      •
      GNU General Public License v3.0
      •8•14•0•0•Updated Jan 14, 2025Jan 14, 2025

    • seroba

      Public
      A Fork of the Original SeroBA
      Python
      •
      Other
      •20•2•0•0•Updated Jan 9, 2025Jan 9, 2025

    • spn-pbp-amr

      Public
      PBP resistance assignment for Streptococcus pneumoniae
      Perl
      •
      MIT License
      •2•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • Gladstone-et-al-MGEN-2019

      Public archive
      Recombination masked lineage alignment
      0•0•0•0•Updated Sep 23, 2019Sep 23, 2019