Skip to content

@IDEELResearch IDEEL - Infectious Disease Epidemiology and Ecology Lab

Change the repository type filter

All

    Repositories list

    26 repositories

    • DRCAedesSeq

      Public
      R
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • Luminex_Preprocessing

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • dhs_hbv

      Public
      Analysis of hepatitis B virus in children in the Democratic Republic of Congo
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • PvMIPs

      Public
      Scripts used to design and analyze molecular inversion probes for Plasmodium vivax
      HTML
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • scrape

      Public
      Spatial Covariate Retrieval and Preprocessing for Evaluation
      R
      •
      Other
      •0•0•2•0•Updated Oct 7, 2024Oct 7, 2024

    • stitch

      Public
      Spatial Temporal Integrated Trends Compilation Hub
      R
      •
      Other
      •0•0•6•0•Updated Sep 26, 2024Sep 26, 2024

    • tpallidum_genomics

      Public
      Shell
      •1•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • PmPopGen

      Public
      Code used for analysis of African Plasmodium malariae whole genomes derived from hybrid capture enrichment.
      R
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • RTSS_Kisumu_Schisto

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • hbv_hover

      Public
      Analysis of households and individuals enrolled in HOVER-HBV study in Kinshasa, DRC
      R
      •1•1•0•0•Updated Apr 5, 2024Apr 5, 2024

    • animalaria

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • nonfalciparum_in_DRC

      Public
      R
      •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

    • vcfdo

      Public
      Some tools for processing and annotating VCF files, with focus on Plasmodium spp
      Python
      •
      MIT License
      •4•6•3•0•Updated Jul 30, 2021Jul 30, 2021

    • vcfRmanip

      Public
      Various interactive tools for wrangling vcf data with a focus on malaria (dependent on vcfR).
      R
      •
      Other
      •1•1•0•0•Updated Nov 10, 2020Nov 10, 2020

    • nanopore-pipelines

      Public
      Scripts and pipelines for analyzing Oxford Nanopore long-read data
      Shell
      •3•4•0•1•Updated Apr 1, 2020Apr 1, 2020

    • SeekDeepRANN

      Public
      R
      •0•0•0•0•Updated Jul 16, 2019Jul 16, 2019

    • NGS_Align_QC_Pipelines

      Public
      IDEEL pipelines for next-generation sequence quality control and analysis
      Python
      •1•3•0•0•Updated Jun 19, 2019Jun 19, 2019

    • sfspy

      Public
      Some Python utilities for working with site frequency spectra (SFS).
      Python
      •
      MIT License
      •0•0•0•0•Updated May 21, 2019May 21, 2019

    • Filter_Fastq_Reads

      Public
      Python
      •0•0•0•0•Updated May 15, 2019May 15, 2019

    • vcfR2plsmdmcalc

      Public
      Basic calculations and summary statistics for Plasmodium spp. data
      R
      •0•0•0•0•Updated Feb 2, 2019Feb 2, 2019

    • lumpyR2sh

      Public
      Simple wrapper to make lumpy submission easier
      R
      •0•0•0•0•Updated Jan 11, 2019Jan 11, 2019

    • snakeskin

      Public
      Python utilities to ease writing of Snakemake pipelines
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 8, 2019Jan 8, 2019

    • ideelsecretsanta2018

      Public
      R
      •0•0•0•0•Updated Nov 30, 2018Nov 30, 2018

    • mips2snps

      Public
      Workflow to transform haplotype output of MIPWrangler into standard variant call formats
      0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

    • SeqDownloads

      Public
      Scripts to Download Publicly Available Sequences
      0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

    • PanPlasm_Spec

      Public
      Identifying Plasmodium primers for NGS speciation
      0•0•0•0•Updated Oct 10, 2018Oct 10, 2018