Imaging Data Commons

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60 repositories

highdicom
Public
High-level DICOM abstractions for the Python programming language
numpy dicom python3 pydicom typehints
Python
•
MIT License
•38•188•26•6•Updated Feb 9, 2025Feb 9, 2025
ThrottleProxy
Public
(CORE REPO)
core-repo
Python
•
Apache License 2.0
•0•2•4•0•Updated Feb 8, 2025Feb 8, 2025
IDC-Docs
Public
Source for IDC documentation
BSD 3-Clause "New" or "Revised" License
•2•5•7•1•Updated Feb 7, 2025Feb 7, 2025
ohif-gcp-mode
Public
OHIF GCP Mode
JavaScript
•
MIT License
•0•0•0•0•Updated Feb 7, 2025Feb 7, 2025
IDC-Common
Public
Shared code between repositories (CORE REPO)
core-repo
Python
•
Apache License 2.0
•4•0•0•0•Updated Feb 7, 2025Feb 7, 2025
IDC-WebApp
Public
Web Application front end for IDC (CORE REPO)
core-repo
JavaScript
•
Apache License 2.0
•9•6•124•0•Updated Feb 7, 2025Feb 7, 2025
ViewersV3
Public
OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)
core-repo idc-viewers
TypeScript
•
MIT License
•3.5k•0•2•0•Updated Feb 4, 2025Feb 4, 2025
slim
Public
Interoperable web-based DICOM slide microscopy viewer and annotation tool
react oidc dicomweb digital-pathology idc-viewers
TypeScript
•
Apache License 2.0
•39•125•66•2•Updated Feb 4, 2025Feb 4, 2025
IDC-Tutorials
Public
Self-guided notebook tutorials to help get started with using IDC
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•17•30•14•6•Updated Feb 3, 2025Feb 3, 2025
idc-index
Public
Python package to simplify access to the data available from NCI Imaging Data Commons
Python
•
MIT License
•6•11•19•0•Updated Jan 29, 2025Jan 29, 2025
IDC-Cron
Public
Cron jobs run for IDC monitoring (CORE REPO)
core-repo
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 24, 2025Jan 24, 2025
idc-viewers-sandbox-gha-testing
Public
MIT License
•0•0•0•0•Updated Jan 17, 2025Jan 17, 2025
idc-sm-annotations-conversion
Public
conversion dicom pathomics
Python
•
MIT License
•1•0•0•0•Updated Jan 17, 2025Jan 17, 2025
libdicom
Public
C library for reading DICOM files
c dicom medical-imaging
C
•
MIT License
•8•17•2•0•Updated Jan 16, 2025Jan 16, 2025
idc-wsi-conversion
Public
(CORE REPO)
core-repo
Shell
•
Other
•0•12•1•0•Updated Jan 13, 2025Jan 13, 2025
.github
Public
MIT License
•0•0•0•0•Updated Jan 13, 2025Jan 13, 2025
IDC-API
Public
Google Endpoints API providing programmatic access (CORE REPO)
core-repo
Python
•
Apache License 2.0
•3•0•3•0•Updated Jan 7, 2025Jan 7, 2025
CloudSegmentator
Public
Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud
Jupyter Notebook
•
Apache License 2.0
•3•4•4•0•Updated Jan 4, 2025Jan 4, 2025
github_analytics
Public
Scripts for monitoring and archival of GitHub insights for IDC-related repositories
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•1•0•0•0•Updated Dec 23, 2024Dec 23, 2024
idc-comppath-reproducibility
Public
Classification of lung tumor slide images with the NCI Imaging Data Commons
machine-learning artificial-intelligence cloud-computing reproducibility fair-data computational-pathology
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Dec 20, 2024Dec 20, 2024
Viewers
Public
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)
core-repo idc-viewers
JavaScript
•
MIT License
•3.5k•2•4•1•Updated Dec 19, 2024Dec 19, 2024
dicom-microscopy-viewer
Public
Web-based DICOM slide microscopy viewer library
javascript npm dicom openlayers dicomweb dicom-json idc-viewers
JavaScript
•
MIT License
•37•105•9•3•Updated Dec 16, 2024Dec 16, 2024
idc-index-data
Public
Python package providing the index to query and download data hosted by the NCI Imaging Data Commons
Python
•
MIT License
•4•1•2•0•Updated Dec 11, 2024Dec 11, 2024
idc-slim
Public
Interoperable slide microscopy viewer for thin clients (CORE REPO)
core-repo idc-viewers
TypeScript
•
Apache License 2.0
•0•0•1•0•Updated Dec 11, 2024Dec 11, 2024
etl_flow
Public
(CORE REPO)
core-repo
Python
•
Apache License 2.0
•3•4•4•0•Updated Dec 2, 2024Dec 2, 2024
aws_etl
Public
Code to transfer IDC image files from Google Cloud Storage to AWS S3 (CORE REPO)
core-repo
Python
•
Apache License 2.0
•0•0•1•0•Updated Nov 23, 2024Nov 23, 2024
SlicerIDCBrowser
Public
A 3D Slicer extension to support access to the content of NCI Imaging Data Commons
3d-slicer-extension
Python
•
BSD 3-Clause "New" or "Revised" License
•5•5•12•1•Updated Nov 18, 2024Nov 18, 2024
idc-prostate-mri-analysis
Public
Jupyter Notebook
•
Apache License 2.0
•2•4•0•0•Updated Nov 8, 2024Nov 8, 2024
ohif-gcp-extension
Public
TypeScript
•
MIT License
•0•0•1•0•Updated Nov 4, 2024Nov 4, 2024
dicomweb-client
Public
Python client for DICOMweb RESTful services
numpy dicom python3 pytest python-requests dicomweb pydicom typehints
Python
•
MIT License
•38•115•15•4•Updated Oct 22, 2024Oct 22, 2024