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    56 repositories

    • FRETpredict

      Public
      Software for the prediction of FRET data from conformational ensembles.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•22•1•0•Updated Dec 19, 2024Dec 19, 2024

    • _2024_cagiada_stability

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •6•57•2•1•Updated Dec 18, 2024Dec 18, 2024

    • ColabCALVADOS

      Public
      Jupyter Notebook on Google Colaboratory to generate and refine protein conformational ensembles from CALVADOS simulations
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Dec 17, 2024Dec 17, 2024

    • _2023_Tesei_IDRome

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •5•36•2•0•Updated Dec 17, 2024Dec 17, 2024

    • CALVADOS

      Public
      Python
      •
      GNU General Public License v3.0
      •4•36•1•0•Updated Dec 13, 2024Dec 13, 2024

    • _2025_Pedersen_PRKN_BAG6

      Public
      BAG6 and RNF126 are broadly involved in protein quality control of non-native missense protein variants
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • _2024_Larsen-Ledet_MLH1

      Public
      data and scripts for "Disentangling the mutational effects on protein stability and interaction of human MLH1"
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

    • _2025_Voutsinos_degron_cytosol

      Public
      A complete map of human cytosolic degrons and characterization of their exposure and relevance for disease
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • _2024_yasuda_RNA

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

    • _2024_Cao_CALVADOSCOM

      Public
      Jupyter Notebook
      •
      MIT License
      •1•12•0•0•Updated Dec 5, 2024Dec 5, 2024

    • _2023_Thomasen_Martini

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•4•4•0•Updated Dec 1, 2024Dec 1, 2024

    • _2024_Theisen_Proline_Selection

      Public
      Repository for code and data related to publication
      Component Pascal
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • _2024_buelow_PSpred

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 18, 2024Nov 18, 2024

    • _2024_due_ANAC

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • _2024_Larsen-Ledet_CPOP

      Public
      CPOP processing and analysis code
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • _2024_cagiada-jonsson-func

      Public
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Oct 23, 2024Oct 23, 2024

    • _2023_Garcia-Cabau_CPEB4

      Public
      Molecular simulations of the N-terminal domain of CPEB4
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • _2023_Blaabjerg_SSEmb

      Public
      Jupyter Notebook
      •
      MIT License
      •2•27•1•0•Updated Sep 17, 2024Sep 17, 2024

    • _2024_Schulze_abundance-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • DEERpredict

      Public
      Software for the prediction of DEER and PRE data from conformational ensembles.
      molecular-simulationbiophysicsnmr-spectroscopyeprdeer
      Jupyter Notebook
      •
      Other
      •3•12•0•0•Updated Sep 3, 2024Sep 3, 2024

    • PRISM

      Public
      Software development pipelines related to the PRISM project
      Python
      •4•8•15•0•Updated Jun 27, 2024Jun 27, 2024

    • _2024_borcsok_ERCC2

      Public
      MIT License
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • _2024_simonsen-larsen_pcna

      Public
      MIT License
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • _2023_Groenbaek-Thygesen_ASPA_MAVE

      Public
      Scripts and data from Groenbæk-Thygesen et al.
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • _2022_ML-ddG-Blaabjerg

      Public
      Python
      •
      Other
      •12•47•8•0•Updated Jun 4, 2024Jun 4, 2024

    • papers

      Public
      Material from papers from KULL centre
      Jupyter Notebook
      •32•67•3•0•Updated May 29, 2024May 29, 2024

    • PrismData

      Public
      Code to handle data of protein variants
      Python
      •0•1•0•0•Updated May 27, 2024May 27, 2024

    • _2023_Pesce_Hst5

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 27, 2024May 27, 2024

    • _2024_Daffern_GMMA_PYR1

      Public
      GMMA can stabilize proteins across different functional constraints
      R
      •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • _2023_Pesce_IDPdesign

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Apr 15, 2024Apr 15, 2024