Repositories list

• lcr-modules

  Public
  Collection of standard analytical pipelines for genomic and transcriptomic data

  Python

  •

  MIT License

  •7•17•11•7•Updated Dec 17, 2024Dec 17, 2024

• lcr-scripts

  Public
  Collection of curated scripts from the Morin and LCR labs

  Python

  •0•4•2•3•Updated Dec 13, 2024Dec 13, 2024

• nhl_oncogene_translocations

  Public
  Analysis of MYC, BCL2, and BCL6 rearrangements in mature B-cell lymphomas.

  R

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• LGenIC

  Public
  Generates input files for the LymphGen lymphoma classifier. See https://llmpp.nih.gov/lymphgen/index.php

  Python

  •3•0•0•0•Updated Aug 10, 2024Aug 10, 2024

• LCR-PDF

  Public
  Quarto extension to generate a custom LCR-styled PDF.

  TeX

  •

  Creative Commons Zero v1.0 Universal

  •44•0•0•0•Updated May 22, 2024May 22, 2024

• DLBCL-tumor-evolution

  Public
  Code for the statistical analysis of DLBCL tumor evolution data.

  R

  •

  MIT License

  •0•0•0•0•Updated Mar 3, 2023Mar 3, 2023

• lcr-modules-demo

  Public
  Demo data for lcr-modules CI

  0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

• LCR-BCCRC.github.io

  Public
  LCR Bioinformatics

  HTML

  •

  MIT License

  •16k•0•0•0•Updated Mar 2, 2021Mar 2, 2021

• ginkgo

  Public
  Cloud-based single-cell copy-number variation analysis tool

  PHP

  •

  BSD 2-Clause "Simplified" License

  •28•0•0•0•Updated Jun 1, 2020Jun 1, 2020

• snakemake-profiles

  Public
  Cookiecutter for snakemake slurm profile

  Python

  •51•0•0•0•Updated May 1, 2020May 1, 2020

• CHL26predictor

  Public
  An R package for applying the classical Hodgkin lymphoma (cHL) 26 gene predictor

  hl27hodgkin-lymphoma

  R

  •1•0•1•0•Updated Jan 27, 2018Jan 27, 2018