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    16 repositories

    • Project-Bloom-Filter

      Public
      Documentation, scripts, and data related to the Bloom Filter project
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jan 30, 2025Jan 30, 2025

    • ViralWasm-Epi

      Public
      A client-side WebAssembly pipeline for viral molecular epidemiology
      JavaScript
      •
      GNU General Public License v3.0
      •1•3•1•7•Updated Jan 28, 2025Jan 28, 2025

    • ViralWasm-Consensus

      Public
      A client-side WebAssembly pipeline for viral consensus sequence calling
      JavaScript
      •
      GNU General Public License v3.0
      •1•1•1•7•Updated Jan 28, 2025Jan 28, 2025

    • sandbox-tutorials

      Public
      WIP tutorials for sandbox.bio
      0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • ViralWasm

      Public
      A client-side user-friendly web application suite for viral genomics.
      JavaScript
      •
      GNU General Public License v3.0
      •1•3•0•7•Updated Nov 4, 2024Nov 4, 2024

    • Viral-Phylogenetics-Activity

      Public
      Activity about viral phylogenetics, targeting K-12 students
      GNU General Public License v3.0
      •1•5•0•0•Updated Apr 8, 2024Apr 8, 2024

    • Reference-Genomes

      Public
      Preprocessed reference genomes for use with ViralMSA, ViralWasm, etc.
      Python
      •
      GNU General Public License v3.0
      •1•0•1•0•Updated Feb 5, 2024Feb 5, 2024

    • Virus-Database-Notes

      Public
      Notes about a potential virus database
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 6, 2024Jan 6, 2024

    • ViralWasm-Paper

      Public
      Files and scripts related to the ViralWasm paper
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 13, 2023Oct 13, 2023

    • ViralWasm-Files

      Public
      Various files related to ViralWasm
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • ENLACE-2023

      Public
      Files related to the research project conducted during UCSD ENLACE 2023
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 17, 2023Aug 17, 2023

    • .github

      Public
      0•0•0•0•Updated Aug 6, 2023Aug 6, 2023

    • AmpliPy

      Public
      Python implementation of viral trimming + variant calling, similar to iVar
      Python
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Jun 5, 2023Jun 5, 2023

    • TreeN93

      Public
      JavaScript
      •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • SEPIA

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated May 19, 2021May 19, 2021

    • SEPIA-paper-final

      Public
      SEPIA (Simulation-based Evaluation Of PriorIzation Algorithms)
      Python
      •0•0•0•0•Updated May 10, 2021May 10, 2021