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    14 repositories

    • PairG

      Public
      Pairing reads on genome graphs
      C++
      •
      Apache License 2.0
      •1•2•0•1•Updated Feb 2, 2024Feb 2, 2024

    • FastANI

      Public
      Fast Whole-Genome Similarity (ANI) Estimation
      microbial-genomics
      C++
      •
      Apache License 2.0
      •67•385•67•4•Updated Jan 10, 2024Jan 10, 2024

    • kmerhash

      Public
      A parallel DNA k-mer counter based on optimized distributed memory hash tables
      C++
      •
      Apache License 2.0
      •3•5•0•0•Updated May 16, 2023May 16, 2023

    • Variant_Framework

      Public
      C++
      •0•1•0•0•Updated Mar 27, 2023Mar 27, 2023

    • PaSGAL

      Public
      Parallel Sequence to Graph Alignment
      variation-graphalignment-algorithm
      C++
      •
      MIT License
      •4•35•3•0•Updated Nov 26, 2022Nov 26, 2022

    • refcom

      Public
      C++
      •
      Apache License 2.0
      •1•0•1•0•Updated Mar 8, 2021Mar 8, 2021

    • kmerind

      Public
      Parallel k-mer indexing for biological sequences
      C++
      •
      Apache License 2.0
      •13•12•0•0•Updated Dec 14, 2018Dec 14, 2018

    • psbec

      Public
      PSbEC is a parallel spectrum-based error correction software.
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 5, 2018Dec 5, 2018

    • bruno

      Public
      Distributed Memory De Bruijn Graph Library
      C++
      •
      Apache License 2.0
      •0•5•2•0•Updated Aug 24, 2018Aug 24, 2018

    • par-mhash

      Public
      Parallel Locality-Sensitive Hashing based heuristic algorithm to construct overlap graphs for large genomic datasets
      C++
      •0•0•0•0•Updated Jul 19, 2018Jul 19, 2018

    • read_partitioning

      Public
      C++
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 20, 2017Aug 20, 2017

    • parconnect

      Public
      Computes graph connectivity for large graphs
      graph-algorithmsparallel-algorithmconnected-component-labelling
      C++
      •
      Apache License 2.0
      •1•11•3•0•Updated Jan 30, 2017Jan 30, 2017

    • metag_partitioning

      Public
      Paralllel assember for soil metagenome datasets, partitions the input datasets using the de Bruijn graph connectivity
      C
      •1•6•1•0•Updated Sep 29, 2016Sep 29, 2016

    • psac

      Public
      Parallel Suffix Array, LCP Array, and Suffix Tree Construction
      C++
      •
      Apache License 2.0
      •8•1•0•0•Updated Jan 14, 2016Jan 14, 2016