Repositories list

• PennSIVE_neuro_pip

  Public
  R

  •2•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• ComBatFamQC

  Public
  R

  •2•0•0•0•Updated Nov 20, 2024Nov 20, 2024

• ComBatFam_Pipeline

  Public
  R

  •4•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• swipeqc

  Public
  React app for doing quality-control on large NIFTI datasets

  Shell

  •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• bossr

  Public
  R package for BOSS algorithm

  R

  •

  Other

  •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• ComBatFamily

  Public
  ComBat Family of Harmonization Methods

  HTML

  •4•0•0•0•Updated Jun 2, 2023Jun 2, 2023

• Dockerfiles

  Public
  Example scripts to setup backend infrastructure

  Dockerfile

  •0•0•0•0•Updated May 18, 2023May 18, 2023

• pennsive.github.io

  Public
  PennSIVE internal website

  JavaScript

  •9•0•2•1•Updated Apr 26, 2023Apr 26, 2023

• mstools

  Public
  Source code to build the pennsive/mstools Docker image

  R

  •0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• drat

  Public
  Sample drat repository for easy forking and bootstrapping

  95•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• bossrdata

  Public
  R

  •

  Other

  •0•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• cube

  Public
  Container runtime GUI & CUBIC client

  JavaScript

  •0•0•0•10•Updated Jan 6, 2023Jan 6, 2023

• qsm

  Public
  Python

  •0•2•0•3•Updated Dec 27, 2022Dec 27, 2022

• pIMCo

  Public
  R package for estimating PCA-based Intermodal Coupling for >=2 Modalities

  R

  •

  Other

  •2•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• PeDecURe

  Public
  R

  •2•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• FCHarmony

  Public
  Methods for harmonization of functional connectivity matrices

  R

  •3•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• vesselr

  Public
  R package for gradient- and vessel-related tools for 3D volumes

  R

  •2•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• mmdt

  Public
  An R package to implement the Multi-Modal Density Test (MMDT; Dworkin et al. 2020)

  R

  •1•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• longCombat

  Public
  R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data

  R

  •

  Artistic License 2.0

  •23•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• rCoCoA

  Public
  Fully and semi-parametric estimators of conditional correlation models with association size (CoCoA).

  R

  •1•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• SuBLIME_package

  Public
  R

  •7•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• rtapas

  Public
  An R package to implement TAPAS: A Thresholding Approach for Probability Map Automatic Segmentation

  R

  •4•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• mimosa

  Public
  An R package to implement MIMoSA: A Method for Inter-Modal Segmentation Analysis

  R

  •5•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• lesiontools

  Public
  Miscellaneous tools for statistical and computational analysis of MS lesion texture

  R

  •3•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• neuroCombat_Rpackage

  Public
  neuroCombat R package

  R

  •8•0•0•1•Updated Dec 7, 2022Dec 7, 2022

• RAVEL

  Public
  Intensity normalization of structural MRIs using RAVEL

  R

  •12•0•0•1•Updated Dec 4, 2022Dec 4, 2022

• WhiteStripe

  Public
  WhiteStripe Package

  R

  •6•0•0•1•Updated Dec 4, 2022Dec 4, 2022

• Distributed-ComBat

  Public
  Adaptation of ComBat for a distributed data setting

  R

  •3•0•0•0•Updated Oct 19, 2022Oct 19, 2022

• PennSIVEpype

  Public
  Workflows and interfaces for neuroimaging packages

  Python

  •

  Other

  •530•0•0•0•Updated Mar 16, 2022Mar 16, 2022

• cvs-bids-app

  Public
  R

  •2•0•0•0•Updated Mar 2, 2022Mar 2, 2022