Skip to content
Change the repository type filter

All

    Repositories list

    • RTX-KG2

      Public
      Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
      Python
      MIT License
      8391930Updated Dec 4, 2024Dec 4, 2024
    • RTX

      Public
      Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)
      Python
      MIT License
      21331111Updated Dec 4, 2024Dec 4, 2024
    • This repo is created for hosting a pipeline for automatically training xDTD model.
      Python
      MIT License
      3100Updated Dec 3, 2024Dec 3, 2024
    • PloverDB

      Public
      An in-memory database service for hosting and serving biomedical knowledge graphs as TRAPI APIs
      Python
      MIT License
      4130Updated Dec 1, 2024Dec 1, 2024
    • 0000Updated Aug 26, 2024Aug 26, 2024
    • NL2TRAPI

      Public
      A prototype investigation of converting natural language questions to the TRAPI format
      Python
      MIT License
      1100Updated Feb 23, 2024Feb 23, 2024
    • Tool to find the "essential drug" corresponding to any biolink:ChemicalEntity
      Python
      0000Updated Jul 5, 2023Jul 5, 2023
    • Code to parse ARS results dump and extract ARA scores
      Jupyter Notebook
      0000Updated Apr 12, 2023Apr 12, 2023
    • Official Developer Documentation repository for the Biomedical Data Translator: https://translator-developer-documentation.readthedocs.io/en/latest/
      Creative Commons Zero v1.0 Universal
      17000Updated Mar 29, 2023Mar 29, 2023
    • TRAPI Response merging
      Python
      0000Updated Aug 2, 2022Aug 2, 2022
    • NCATS Biomedical Data Translator repository for shared, large file access
      3000Updated Aug 4, 2021Aug 4, 2021
    • d2s-docs

      Public
      📖 Home for the Data2Services project documentation
      JavaScript
      Creative Commons Attribution 4.0 International
      5000Updated May 25, 2021May 25, 2021
    • umls2rdf

      Public
      These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
      Python
      Other
      37000Updated Feb 11, 2021Feb 11, 2021
    • Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.
      Racket
      MIT License
      53000Updated Feb 4, 2021Feb 4, 2021
    • A testing framework for Translator using tests written in Behave
      Gherkin
      BSD 3-Clause "New" or "Revised" License
      14000Updated Jan 1, 2020Jan 1, 2020
    • kgx

      Public
      Knowledge Graph Exchange tools for BioLink model-compliant graphs
      Python
      BSD 3-Clause "New" or "Revised" License
      28000Updated Dec 8, 2019Dec 8, 2019
    • owltools

      Public
      OWLTools
      Java
      BSD 3-Clause "New" or "Revised" License
      33000Updated Apr 5, 2019Apr 5, 2019
    • robot

      Public
      ROBOT is an OBO Tool
      Java
      BSD 3-Clause "New" or "Revised" License
      74000Updated Mar 19, 2019Mar 19, 2019