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    15 repositories

    • technical_test_stanislas

      Public
      Go
      •1•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • tusd

      Public
      Reference server implementation in Go of tus: the open protocol for resumable file uploads
      Go
      •
      MIT License
      •487•1•0•0•Updated Aug 31, 2023Aug 31, 2023

    • go-tus

      Public
      A pure Go client for the tus resumable upload protocol
      Go
      •
      MIT License
      •63•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • clinvcf

      Public
      Generate an enhanced VCF files from ClinVar XML Full releases
      Nim
      •
      Apache License 2.0
      •1•13•1•0•Updated Jul 13, 2023Jul 13, 2023

    • clinvarome

      Public
      Project code to generate a comprehensive annotated clinvarome from variant alert outputs
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 19, 2021Jul 19, 2021

    • variant_alert

      Public
      Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two versions of ClinVar database.
      Python
      •
      Apache License 2.0
      •0•14•0•0•Updated Jul 19, 2021Jul 19, 2021

    • GenomeAlert_app

      Public
      Shiny app of Genome Alert! explorations.
      HTML
      •
      Apache License 2.0
      •1•3•0•0•Updated Jan 25, 2021Jan 25, 2021

    • docopt.nim

      Public
      Command line arguments parser that will make you smile (port of docopt to Nim)
      Nim
      •
      MIT License
      •26•0•1•0•Updated May 28, 2020May 28, 2020

    • yq

      Public
      yq is a portable command-line YAML processor
      Go
      •
      MIT License
      •610•0•0•0•Updated May 23, 2020May 23, 2020

    • vt

      Public
      A tool set for short variant discovery in genetic sequence data.
      C
      •
      MIT License
      •37•0•0•0•Updated Mar 31, 2020Mar 31, 2020

    • hmmer

      Public
      HMMER: biological sequence analysis using profile HMMs
      C
      •
      Other
      •70•0•0•0•Updated May 29, 2019May 29, 2019

    • hts-nim

      Public
      nim wrapper for htslib for parsing genomics data files
      Nim
      •
      MIT License
      •26•0•0•0•Updated Feb 19, 2019Feb 19, 2019

    • mosdepth

      Public
      fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
      Nim
      •
      MIT License
      •101•0•0•0•Updated Feb 17, 2019Feb 17, 2019

    • kraf

      Public
      Kmer based Recalibration of Allele Frequency
      Nim
      •
      MIT License
      •0•5•0•0•Updated Jan 28, 2019Jan 28, 2019

    • cello

      Public
      A string library
      Nim
      •
      Apache License 2.0
      •10•0•0•0•Updated Nov 7, 2018Nov 7, 2018