SlicerDMRI

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28 repositories

wmap
Public
White Matter Analysis Pipeline (WMAP)
pipeline dicom neuroimaging preprocessing diffusion-mri tractography white-matter dmri
Python
•0•0•0•1•Updated Feb 6, 2025Feb 6, 2025
SlicerDMRI
Public
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
medical-image-computing diffusion-mri 3d-slicer tractography 3d-slicer-extension neuroimaging
C++
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Other
•27•78•50•16•Updated Jan 24, 2025Jan 24, 2025
whitematteranalysis
Public
White matter tractography clustering and more...
neuroimaging diffusion-mri tractography white-matter dmri
Python
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Other
•34•71•39•9•Updated Jan 9, 2025Jan 9, 2025
SlicerTractParcellation
Public
Automatic parcellation of white matter tractography using WMA method and ORG atlas
Python
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Other
•2•1•0•1•Updated Dec 4, 2024Dec 4, 2024
slicerdmri.github.io
Public
SlicerDMRI organization website repository
website documentation docs neuroimaging diffusion-mri tractography documentation-website 3d-slicer-extension dmri
TeX
•3•0•5•1•Updated Nov 25, 2024Nov 25, 2024
TractShapeNet
Public
0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
DeepMSP
Public
Official PyTorch implementation of DeepMSP (Deep Multimodal Saliency Parcellation)
deep-learning pipeline neuroimaging
Python
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Other
•0•0•0•0•Updated Aug 16, 2024Aug 16, 2024
TractoSCR
Public
MIT License
•0•0•0•0•Updated Jun 6, 2024Jun 6, 2024
SlicerWMA
Public
Extension for 3D slicer that provides a module and a python package for fiber clustering and tractography analysis.
neuroimaging diffusion-mri tractography 3d-slicer-extension
Python
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Other
•3•0•2•1•Updated Jun 4, 2024Jun 4, 2024
SlicerDcm2nii
Public
Support loading DICOM data in Slicer using the functionality of the dcm2niix program.
3d-slicer-extension
Python
•3•4•3•0•Updated Apr 23, 2024Apr 23, 2024
ORG-Atlases
Public
ORG Fiber Clustering White Matter Atlas
neuroimaging atlas diffusion-mri tractography dmri
Other
•6•26•2•4•Updated Nov 14, 2023Nov 14, 2023
TractCloud
Public
[MICCAI 2023] TractCloud: Registration-free tractography parcellation with a novel local-global streamline point cloud representation
Python
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Other
•3•7•0•0•Updated Jul 23, 2023Jul 23, 2023
SupWMA
Public
[MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions", Medical Image Analysis
Python
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Other
•6•22•2•0•Updated Jul 21, 2023Jul 21, 2023
DFC
Public
"DFC: Anatomically Informed Fiber Clustering with Self-supervised Deep Learning for Fast and Effective Tractography Parcellation".
Python
•2•18•1•0•Updated May 1, 2023May 1, 2023
SupWMA-TrainingData
Public
0•1•0•0•Updated Mar 15, 2023Mar 15, 2023
DDMReg
Public
Deep Diffusion MRI Registration (DDMReg)
Python
•4•5•0•0•Updated Jan 19, 2022Jan 19, 2022
DeepWMA
Public
Deep White Matter Analysis
Python
•8•3•0•0•Updated Dec 23, 2021Dec 23, 2021
ConnPrediction
Public
Python
•4•3•0•0•Updated Oct 15, 2021Oct 15, 2021
tutorials
Public
SlicerDMRI tutorial repository
neuroimaging diffusion-mri 3d-slicer-extension dmri
HTML
•1•1•1•0•Updated Sep 20, 2019Sep 20, 2019
DCMTK
Public
WARNING: This is NOT the official upstream DCMTK git repository.
Other
•43•0•0•0•Updated Nov 8, 2018Nov 8, 2018
DMRITestData
Public
0•0•0•0•Updated Jun 22, 2018Jun 22, 2018
SDPY
Public
CMake
•0•0•0•0•Updated Apr 27, 2018Apr 27, 2018
bib-publication-list
Public
Interactive publications lists with JavaScript + Bibtex
JavaScript
•63•0•0•0•Updated Feb 12, 2018Feb 12, 2018
ukftractography
Public
C
•27•0•0•0•Updated May 26, 2017May 26, 2017
SlicerDMRI-Snapshots
Public
MIT License
•0•0•0•0•Updated Mar 17, 2017Mar 17, 2017
Sandbox
Public
New modules created for diffusion MRI tasks in 3D Slicer
C++
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Other
•4•0•2•0•Updated Dec 27, 2016Dec 27, 2016
Slicer
Public
Multi-platform, free open source software for visualization and image computing.
C++
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Other
•458•1•0•0•Updated Feb 26, 2016Feb 26, 2016
SlicerDMRI-data
Public
1•0•0•0•Updated Jan 26, 2016Jan 26, 2016