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    82 repositories

    • AP-Health-Effects

      Public
      Graphical overview of the (causal and likely causal) health effects of air pollution.
      JavaScript
      •
      GNU Affero General Public License v3.0
      •2•1•1•1•Updated Jan 20, 2025Jan 20, 2025

    • malclimsim

      Public
      Simulating From and Estimating Parameters of a Dynamical Malaria Model
      R
      •
      Other
      •1•2•0•0•Updated Jan 17, 2025Jan 17, 2025

    • BeninSMC

      Public
      R
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • tricc

      Public
      Tool for rapid implementation of clinical content (TRICC) for CDSS/XFORM
      Python
      •
      Other
      •1•5•11•0•Updated Jan 17, 2025Jan 17, 2025

    • ITNcascades

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • openmalaria

      Public
      A simulator of malaria epidemiology and control
      C++
      •
      GNU General Public License v2.0
      •33•78•0•3•Updated Jan 16, 2025Jan 16, 2025

    • HapSNPFlow

      Public
      A streamlined pipeline for processing amplicon sequencing data to identify haplotypes and SNPs, enabling efficient genetic variant analysis
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • tricc_og

      Public
      Tool for rapid implementation of clinical content (TRICC), Visual authoring backend
      Python
      •
      Other
      •1•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • climate_tutorial_dashboard

      Public
      Source code of the dashboard presenting model estimates under various climate scenarios
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • cdss_visual_authoring_tool

      Public
      Temporary repository to structure the work of the CDSS Visual Authoring tool work until we have a dedicated organisation or another platform
      0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • AnophelesModel

      Public
      An R package to quantify the impact of vector control interventions according to mosquito species characteristics
      R
      •
      GNU General Public License v3.0
      •0•7•0•0•Updated Oct 1, 2024Oct 1, 2024

    • TES_analytics

      Public
      Algorithms and analysis tools for data generated from malaria therapeutic efficacy studies.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 11, 2024Sep 11, 2024

    • r-openMalariaUtilities

      Public
      Work with OpenMalaria from R
      R
      •
      GNU General Public License v3.0
      •0•2•8•0•Updated Sep 8, 2024Sep 8, 2024

    • OpenCOVID

      Public
      Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.
      R
      •
      GNU General Public License v2.0
      •5•11•0•0•Updated Jul 16, 2024Jul 16, 2024

    • genotyping_comparison_Uganda

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • crvs-smart-ig

      Public
      A SMART IG for CRVS data capturing
      Batchfile
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • timci

      Public
      Tools for Integrated Management of Childhood Illness
      data-sciencerdata-visualizationrmarkdown
      HTML
      •
      GNU General Public License v3.0
      •8•4•5•0•Updated Apr 8, 2024Apr 8, 2024

    • smart-va

      Public
      A demo SMART guideline for verbal autopsy
      HTML
      •
      Other
      •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • opencrvs-farajaland

      Public
      An example configuration module for OpenCRVS using a fictional country
      TypeScript
      •
      Other
      •51•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • cdss_tchad

      Public
      JavaScript
      •0•0•104•0•Updated Feb 15, 2024Feb 15, 2024

    • VivaxModelR

      Public
      Simulations and calculations on a compartmental model for Plasmodium Vivax dynamics
      R
      •
      Other
      •1•2•0•0•Updated Feb 8, 2024Feb 8, 2024

    • openfn-openhim-mediator

      Public
      Js mediator to use openfn scripts in openHIM
      JavaScript
      •2•7•0•0•Updated Jan 29, 2024Jan 29, 2024

    • pyfhirsdc

      Public
      Python scripts to help with the mapping of L2 layer to L3
      Python
      •
      GNU Affero General Public License v3.0
      •2•12•4•1•Updated Nov 23, 2023Nov 23, 2023

    • Game_theory_rabies

      Public
      Code used for the simulations, data analysis and sensitivity analysis for the article "Benefit-cost analysis of coordinated strategies for control of rabies in Africa"
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • WHO-VA

      Public
      Maintenance of the WHO 2022 Verbal Autopsy Instrument and Documentation
      instrumentodkmaintenancexlsform
      26•4•6•0•Updated Aug 7, 2023Aug 7, 2023

    • questionnaire_fhirpath_validator

      Public
      Javascript implementation of FHIRPath
      JavaScript
      •
      Other
      •45•3•0•0•Updated Jul 14, 2023Jul 14, 2023

    • Pureser

      Public
      ODK to Print
      Swift
      •
      MIT License
      •2•1•2•0•Updated Jun 13, 2023Jun 13, 2023

    • pochas-geoutils

      Public
      A Python package includes geo-utils for POCHAS project
      packagespatio-temporalpollen-countspythonmachine-learning
      Python
      •
      MIT License
      •0•1•0•0•Updated May 16, 2023May 16, 2023

    • ZanzibarI3

      Public
      Malaria transmission model for studying imported, introduced and indigenous cases
      Jupyter Notebook
      •0•1•0•0•Updated Mar 29, 2023Mar 29, 2023

    • TBRU_serialTB

      Public
      Population dynamics of Mycobacterium tuberculosis within hosts during treatment.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Mar 15, 2023Mar 15, 2023