Repositories list

• Tietjen_etal_2025_PlosOne

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  •0•0•0•0•Updated Jan 1, 2025Jan 1, 2025

• 2021NAmericanHeatwave

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  Repository for the synthesis paper, Widespread ecological responses and cascading effects of the record-breaking 2021 western North American heatwave

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  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• Gitting-started

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  Readme for Baum lab: how to set up repos, write R-markdown docs, and collaborate with Git

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  •6•9•1•0•Updated Apr 24, 2024Apr 24, 2024

• Baum_etal_2023_ScienceAdvances

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  •0•1•0•0•Updated Jan 30, 2024Jan 30, 2024

• Starko_et_al_Porites_KI

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  Code and data associated with Starko et al. (2023): Marine heawaves threaten cryptic coral diversity and erode associations amongst coevolving partners.

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  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 21, 2023Jul 21, 2023

• Maucieri_etal_2023_ProcRoyB

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  Data and R code for: Tipping points and interactive effects of chronic human disturbance and acute heat stress on coral diversity

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  •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

• gya-research

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  GYA fundamental research - survey response

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  •0•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• Maucieri_Baum_2021_BioCon

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  Data and R code for: Impacts of heat stress on soft corals, an overlooked and highly vulnerable component of coral reef ecosystems, at a central equatorial Pacific atoll

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  •0•0•0•0•Updated May 26, 2022May 26, 2022

• BarkleySound_CanopyKelp

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  Data and code associated with Starko et al. 2022. Ecological Applications.

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  •2•0•0•0•Updated Mar 30, 2022Mar 30, 2022

• Osgood_etal_2021_JAE

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  Data and R code for: Effects of climate-change driven gradual and acute temperature changes on shark and ray species

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  •0•0•0•0•Updated Jun 18, 2021Jun 18, 2021

• Chalifour_etal_2021_CJFAS

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  Code accompanying Chalifour et al. 2021. Chinook salmon exhibit long-term rearing and early marine growth in the Fraser River, B.C., a large urban estuary. CJFAS

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  GNU General Public License v3.0

  •1•2•0•0•Updated Dec 15, 2020Dec 15, 2020

• WestGridIntro

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  This repository serves as a learning space for Baum lab members wishing to learn about using WestGrid for data storage, and advanced computation.

  0•0•0•0•Updated Nov 10, 2020Nov 10, 2020

• Claar_etal_2020_NatCom

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  HTML

  •0•2•0•0•Updated Oct 27, 2020Oct 27, 2020

• Sean_Fish_Acoustics17-18

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  All data related to Sean's acoustics chapter of his Masters thesis

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  •0•0•2•0•Updated Aug 29, 2020Aug 29, 2020

• Osgood_etal_2020_AfrMarSci

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  Data and R code accompanying: Chondrichthyans as an umbrella species-complex for conserving South African biodiversity

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  •0•0•0•0•Updated Jun 19, 2020Jun 19, 2020

• Claar_etal_2020_MolecEcol

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  GNU General Public License v3.0

  •1•0•0•0•Updated May 15, 2020May 15, 2020

• Osgood_etal_2019_PLOSOne

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  Data and code for Osgood et al. 2019 PLOS One

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  •0•0•0•0•Updated Mar 27, 2020Mar 27, 2020

• Claar_etal_2020_SciRep

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  Data and R code accompanying: Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef

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  •0•3•0•0•Updated Feb 22, 2020Feb 22, 2020

• Iacarella_etal_2018_GlobalChangeBiology

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  R scripts for beta-diversity analysis

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  •1•0•0•0•Updated Feb 12, 2020Feb 12, 2020

• Magel_etal_2020_EcolApp

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  Data and R code for: Direct and indirect effects of climate change-amplified pulse heat stress events on coral reef fish communities

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  •1•2•0•0•Updated Feb 5, 2020Feb 5, 2020

• Chalifour_etal_2019_MEPS

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  R code accompanying Chalifour et al. Habitat use by juvenile salmon, other migratory fish, and resident fish species underscores the importance of estuarine habitat mosaics

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  •1•2•0•0•Updated Aug 29, 2019Aug 29, 2019

• McDevittIrwin_etal_2019_CoralReefs

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  This is the repository for McDevitt-Irwin et al. 2019 in Coral Reefs

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  •0•0•0•0•Updated Feb 11, 2019Feb 11, 2019

• Magel_etal_2019_SciRep

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  Data and R code for: Effects of bleaching-associated mass coral mortality on reef structural complexity across a gradient of local disturbance

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  •0•1•0•0•Updated Nov 28, 2018Nov 28, 2018

• Robinson_etal_2018_CoralReefs

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  R code accompanying Robinson et al. Environmental conditions and herbivore biomass determine coral reef benthic community composition: implications for quantitative baselines.

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  GNU General Public License v3.0

  •1•2•0•0•Updated Oct 5, 2018Oct 5, 2018

• open-science-project

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  Ideas, data, R scripts, figures, and writing for Baum lab #OpenDerby

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  •0•0•7•0•Updated Feb 7, 2018Feb 7, 2018

• Claar_etal_2018_PLoSOne

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  Code, data, and figures for Claar et al manuscript "Global patterns and impacts of El Niño events on coral reefs: a meta-analysis." (PLOS ONE)

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  •0•1•0•0•Updated Dec 30, 2017Dec 30, 2017

• McPherson_etal_2018_MEE_sim-ecol-communities

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  Code for McPherson et al. 'A simulation tool to scrutinise the behaviour of functional diversity metrics' (in review)

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  MIT License

  •2•4•0•0•Updated Jul 18, 2017Jul 18, 2017

• DunicBaum_2017_JAnimEcol

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  •0•0•0•0•Updated Feb 13, 2017Feb 13, 2017

• Robinson_etal_2017_GlobalChangeBiology

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  Code accompanying Robinson et al. Fishing degrades size structure of coral reef fish communities (2016, Global Change Biology).

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  •0•2•0•0•Updated Sep 3, 2016Sep 3, 2016

• RobinsonBaum_2016_CJFAS

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  Code accompanying Robinson & Baum (2016, Canadian Journal of Fisheries & Aquatic Sciences)

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  •1•1•0•0•Updated Jul 11, 2016Jul 11, 2016