carpentries-incubator

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188 repositories

bioc-scrnaseq
Public
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
rna-seq r english bioconductor lesson single-cell pre-alpha carpentries-incubator
R
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Other
•2•3•11•0•Updated Feb 18, 2025Feb 18, 2025
targets-workshop
Public
Pre-alpha {targets} workshop
r reproducible-research english lesson pre-alpha
R
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Other
•9•34•20•5•Updated Feb 18, 2025Feb 18, 2025
julia-novice
Public
A lesson exploring the Julia language
programming julia julia-language alpha carpentries-incubator lesson
Julia
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Other
•23•17•13•0•Updated Feb 18, 2025Feb 18, 2025
SDC-BIDS-EEG-EEGLAB
Public
Working with EEGLAB and BIDS-EEG
programming matlab eeg english eeg-signals neuroimaging eeg-data bids pre-alpha eeg-analysis
Other
•2•2•1•0•Updated Feb 18, 2025Feb 18, 2025
blogging-with-hugo-and-github-pages
Public
Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages
blog github-pages hugo beta hugo-site english lesson
HTML
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Other
•1•3•0•0•Updated Feb 18, 2025Feb 18, 2025
python-intermediate-development
Public
"Intermediate Research Software Development Skills (Python)" Lesson Material
python training beta software-development lesson training-materials carpentry-lesson intermediate software-design software-engineering-research
TeX
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Other
•65•52•44•4•Updated Feb 18, 2025Feb 18, 2025
good-practices-lesson
Public
Good practices in research software development (without Git)
english lesson pre-alpha research-software-engineering carpentries-incubator
Other
•0•1•28•1•Updated Feb 18, 2025Feb 18, 2025
docker-introduction
Public
Reproducible Computational Environments using Containers
education containers beta english lesson hacktoberfest carpentries-incubator docker carpentries
Python
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Other
•50•51•36•5•Updated Feb 18, 2025Feb 18, 2025
swc-ext-python
Public
Workflows with Python and Git
python english lesson alpha carpentries-incubator
HTML
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Other
•11•1•13•0•Updated Feb 18, 2025Feb 18, 2025
fair-for-leaders
Public
FAIR for leaders
english lesson fair pre-alpha life-sciences carpentries-incubator
Python
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Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
R-help-reprexes
Public
A lesson on getting unstuck in R, debugging, making reproducible examples (for biologists)
debugging r minimal reproducible example help english lesson pre-alpha reprex
R
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Other
•0•3•19•2•Updated Feb 18, 2025Feb 18, 2025
SDC-BIDS-dMRI
Public
Introduction to dMRI
programming neuroimaging dwi fsl pre-alpha diffusion-mri tractography ants dipy carpentries-incubator
Jupyter Notebook
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Other
•18•24•22•2•Updated Feb 18, 2025Feb 18, 2025
bioc-project
Public
Introduction to the Bioconductor project
r bioconductor hacktoberfest pre-alpha life-sciences carpentries-incubator english lesson
R
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Other
•15•18•6•2•Updated Feb 18, 2025Feb 18, 2025
high-dimensional-stats-r
Public
High-dimensional statistics with R
r statistics pre-alpha carpentries-incubator high-dimensional-statistics english lesson
R
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Other
•17•11•0•0•Updated Feb 18, 2025Feb 18, 2025
mgnify-metagenomics
Public
Managing and Retrieving Metagenomics Data with MGnify
english lesson pre-alpha
Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
efficient-computing-in-julia
Public
A lesson on efficient computing in the Julia language
julia english lesson pre-alpha carpentries-incubator
Julia
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Other
•0•1•8•0•Updated Feb 18, 2025Feb 18, 2025
hermes_stat_inf_data_vis
Public
Statistical inference and data visualization for the humanities
storytelling data-visualization english statistical-inference lesson pre-alpha carpentries-incubator
Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
r-geospatial-urban
Public
Geospatial Data Carpentry with R for Urbanists
r beta geospatial-data english lesson urban-data-science carpentries-incubator
HTML
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Other
•11•2•29•7•Updated Feb 18, 2025Feb 18, 2025
deep-learning-geospatial
Public
An introduction to deep learning for geospatial raster data (satellite images)
deep-learning raster geospatial-data english lesson pre-alpha carpentries-incubator
Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
fair-for-busy-biologists
Public
A short course on FAIR and data managment for biomedical research
english lesson alpha fair data-management biomedical biomedical-data-science carpentries-incubator
Other
•0•1•0•0•Updated Feb 18, 2025Feb 18, 2025
hpc-workflows
Public
HPC Workflow Management with Snakemake
snakemake english lesson workflows pre-alpha carpentries-incubator hpc-carpentry
Python
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Other
•4•3•9•0•Updated Feb 18, 2025Feb 18, 2025
intro-data-viz
Public
a Carpentries-style lesson introducing the basics of data visualization
english lesson pre-alpha carpentries-incubator data-visualization
Other
•2•9•11•0•Updated Feb 18, 2025Feb 18, 2025
python-humanities-lesson
Public
Python for Humanities
programming english lesson alpha digital-humanities carpentries carpentries-incubator python
Other
•7•13•5•0•Updated Feb 18, 2025Feb 18, 2025
FAIRification-of-RNAseq-Data
Public
FAIRification of RNAseq Data
bioinformatics biology english lesson fair data-management rna-seq-analysis pre-alpha carpentries-incubator
Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
fair-bio-practice
Public
FAIR in (biological) practice
beta english lesson fair life-sciences carpentries-incubator
Jupyter Notebook
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Other
•12•8•20•0•Updated Feb 18, 2025Feb 18, 2025
SDC-BIDS-fMRI
Public
fMRI Imaging Analysis
python programming binder english neuroimaging fmri bids nilearn pre-alpha fmri-data-analysis
Jupyter Notebook
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Other
•39•42•5•2•Updated Feb 18, 2025Feb 18, 2025
pando-python
Public
Performance Profiling & Optimisation of Research Code (Python) - Short Course
python programming english lesson alpha profiling open-educational-resources carpentries-incubator
Python
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Other
•6•0•0•0•Updated Feb 18, 2025Feb 18, 2025
r-tidyverse-4-datasets
Public
R and the Tidyverse for working with data
r tidyverse data-visualization english lesson alpha data-manipulation carpentries-incubator
R
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Other
•6•1•3•1•Updated Feb 18, 2025Feb 18, 2025
snakemake-novice-bioinformatics
Public
Introduction to Snakemake for Bioinformatics
english workflows pre-alpha carpentries-incubator bioinformatics snakemake lesson
Python
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Other
•9•19•23•1•Updated Feb 18, 2025Feb 18, 2025
intro-to-modern-fortran
Public
Introduction to Modern Fortran
programming fortran english lesson pre-alpha carpentries-incubator
R
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Other
•6•15•11•6•Updated Feb 18, 2025Feb 18, 2025