Repositories list

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•64•259•12•Updated Nov 30, 2024Nov 30, 2024

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•2•6•11•Updated Nov 29, 2024Nov 29, 2024

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •24•38•62•6•Updated Nov 28, 2024Nov 28, 2024

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•25•111•5•Updated Nov 28, 2024Nov 28, 2024

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •11•20•249•7•Updated Nov 27, 2024Nov 27, 2024

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•4•Updated Nov 27, 2024Nov 27, 2024

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •2•18•13•18•Updated Nov 27, 2024Nov 27, 2024

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •3•5•1•2•Updated Nov 26, 2024Nov 26, 2024

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •22•88•119•17•Updated Nov 26, 2024Nov 26, 2024

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•5•8•4•Updated Nov 25, 2024Nov 25, 2024

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•3•14•13•Updated Nov 25, 2024Nov 25, 2024

• czi-oss-training

  Public
  Training Materials for Good Open Source Citizenship

  Creative Commons Attribution 4.0 International

  •3•11•4•0•Updated Nov 25, 2024Nov 25, 2024

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•2•Updated Nov 25, 2024Nov 25, 2024

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •20•295•37•2•Updated Nov 25, 2024Nov 25, 2024

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•15•1•2•Updated Nov 25, 2024Nov 25, 2024

• miniwdl-viz

  Public
  A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchart

  WDL

  •

  MIT License

  •0•2•0•3•Updated Nov 22, 2024Nov 22, 2024

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Nov 22, 2024Nov 22, 2024

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

• napari-cryoet-data-portal

  Public
  A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portal

  Python

  •

  MIT License

  •2•9•4•1•Updated Nov 22, 2024Nov 22, 2024

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•64•3•5•Updated Nov 20, 2024Nov 20, 2024

• argo-helm-charts

  Public
  Smarty

  •0•0•0•3•Updated Nov 19, 2024Nov 19, 2024

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •120•636•128•1•Updated Nov 18, 2024Nov 18, 2024

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•12•60•1•Updated Nov 18, 2024Nov 18, 2024

• scRNA-python-workshop

  Public archive
  All the action is on the course webpage -->

  Jupyter Notebook

  •18•27•2•3•Updated Nov 12, 2024Nov 12, 2024

• galago

  Public
  Interpretation aids for genomic epidemiology

  TypeScript

  •

  MIT License

  •3•8•63•0•Updated Nov 7, 2024Nov 7, 2024

• galago-labs

  Public
  Development fork for Galago -- see github.com/chanzuckerberg/galago for stable version

  TypeScript

  •

  MIT License

  •3•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• czgenepi

  Public
  Python

  •

  MIT License

  •4•13•1•7•Updated Nov 5, 2024Nov 5, 2024

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •24•79•0•2•Updated Oct 31, 2024Oct 31, 2024

• czid-amr-heatmap

  Public
  Prototype code for creating CZID-esque heatmap using AMR pipeline data

  Jupyter Notebook

  •

  MIT License

  •0•0•0•1•Updated Oct 22, 2024Oct 22, 2024

• axe-storybook-testing

  Public
  Command line interface for testing Storybook stories for accessibility.

  accessibilityaxetesting

  TypeScript

  •

  MIT License

  •7•52•0•0•Updated Oct 21, 2024Oct 21, 2024