Skip to content

@compmetagen Computational Metagenomics

Change the repository type filter

All

    Repositories list

    12 repositories

    • prok-classify

      Public
      An updated version of the original pipeline metashot/prok-classify by davidealbanese, a workflow for assigning objective taxonomic classifications to bacterial and archaeal genomes, UPDATED to use GTDB-Tk 2.4.0 (2024 version) and the last release of the Genome Database Taxonomy GTDB (Release 220).
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • barelli_et_al_scirep_2021

      Public
      Scripts and data for Barelli et al. "Interactions between parasitic helminths and gut microbiota in wild tropical primates from intact and fragmented habitats"
      0•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • AIforEarth2020

      Public
      Shell
      •0•0•0•0•Updated Jun 19, 2020Jun 19, 2020

    • docker-rdpclassifier

      Public
      Dockerfile
      •0•0•0•0•Updated Apr 15, 2020Apr 15, 2020

    • barelli_et_al_msystems_2020

      Public
      Machine Learning scripts and data for Barelli et al. "The gut microbiota communities of wild arboreal and ground-feeding tropical primates are affected differently by habitat disturbance"
      Python
      •0•1•0•0•Updated Mar 23, 2020Mar 23, 2020

    • micca

      Public
      micca - MICrobial Community Analysis
      bioinformaticsclusteringmetagenomicsamplicon
      Python
      •
      GNU General Public License v3.0
      •9•20•6•0•Updated Feb 12, 2020Feb 12, 2020

    • strainest

      Public
      StrainEst - abundance estimation of strains
      C++
      •
      GNU General Public License v3.0
      •6•21•3•0•Updated Jan 17, 2020Jan 17, 2020

    • rstudio-micca

      Public
      RStudio - micca
      Dockerfile
      •0•1•0•0•Updated Sep 3, 2019Sep 3, 2019

    • taxies

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

    • docker-rstudio

      Public
      0•0•0•0•Updated Apr 11, 2016Apr 11, 2016

    • phylorelief

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Feb 27, 2015Feb 27, 2015

    • phylorelief-paper

      Public
      Scripts and data for "Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting"
      Python
      •0•0•0•0•Updated Nov 14, 2014Nov 14, 2014