Repositories list

• Systematic-benchmarking-of-mass-spectrometry-based-antibody-sequencing-reveals-methodological-biases

  Public
  R

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• embedairr

  Public
  Tool to extract sequence representations from protein language models

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• negative-class-optimization

  Public
  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •0•2•0•0•Updated Oct 20, 2024Oct 20, 2024

• airrtm

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 17, 2024Jul 17, 2024

• airrtm_data

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• Absolut

  Public
  Unconstrained lattice antibody-antigen bindings generator

  Jupyter Notebook

  •19•101•7•0•Updated Jul 1, 2024Jul 1, 2024

• developability_profiling

  Public
  Jupyter Notebook

  •2•15•1•0•Updated Jun 11, 2024Jun 11, 2024

• Preexisting-immunity-influenza-mice

  Public
  Code, figures, and processed data for the manuscript

  0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

• manuscript_bulkseq-scseq-abseq_integration

  Public
  R

  •0•1•0•0•Updated Nov 2, 2023Nov 2, 2023

• manuscript_short_motif_data_processing_supplementary

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Oct 21, 2023Oct 21, 2023

• manuscript_short_motif_experimental_computational_supplementary

  Public
  0•0•0•0•Updated Jun 12, 2023Jun 12, 2023

• mwds_calculator

  Public
  Artificial Bee Colony - Estimation of Distribution Algorithm (ABC-EDA) is an algorithm to compute minimum weight dominating sets of undirected weighted networks. Adapted from Singh's and Shetgaonkar's publication, "Hybridization of Artificial Bee Colony Algorithm with Estimation of Distribution Algorithm for Minimum Weight Dominating Set Problem…

  Python

  •

  GNU Affero General Public License v3.0

  •0•3•0•0•Updated Feb 15, 2023Feb 15, 2023

• desygnator

  Public
  desYgnator is a computational method for comparing AIRR-seq samples. deYgnator stands for DEtection of SYstematic differences in GeneratioN of Adaptive immune recepTOr Repertoires

  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2022Sep 26, 2022

• manuscript_progress_challenges_on-demand_antibody

  Public
  Jupyter Notebook

  •1•5•0•0•Updated Aug 24, 2021Aug 24, 2021

• manuscript_insilico_antibody_generation

  Public
  R

  •

  GNU Affero General Public License v3.0

  •7•22•2•0•Updated Jul 4, 2021Jul 4, 2021

• HackathonCPH2021

  Public
  Repository for the Copenhagen Bioinformatics Hackathon 2021 Protein Edition. (VAE, CLustering)

  Python

  •1•0•0•0•Updated Apr 23, 2021Apr 23, 2021