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    8 repositories

    • FIRE

      Public
      A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
      Python
      •
      MIT License
      •3•16•1•0•Updated Dec 23, 2024Dec 23, 2024

    • fibertools-rs

      Public
      Tools for fiberseq data written in rust.
      Rust
      •5•43•2•0•Updated Dec 11, 2024Dec 11, 2024

    • fiberseq.github.io

      Public
      Source for "The computational guide to Fiber-seq"
      Python
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • FiberHMM

      Public
      HMM-based footprint caller for Fiber-seq data
      Python
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • fiberseq-qc

      Public
      QC plots and statistics
      Shell
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Sep 22, 2024Sep 22, 2024

    • .github

      Public
      0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • train-m6A-calling

      Public
      ML methods for m6A-calling
      Jupyter Notebook
      •
      MIT License
      •1•3•0•1•Updated Apr 18, 2024Apr 18, 2024

    • fiberseq-smk

      Public archive
      Snakemake pipeline for processing fiberseq data
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 11, 2024Jan 11, 2024