Repositories list

• genome-nexus-annotation-pipeline

  Public
  Library and tool for annotating MAF files using Genome Nexus Webserver API

  Java

  •

  MIT License

  •27•9•40•8•Updated Oct 11, 2024Oct 11, 2024

• genome-nexus

  Public
  Backend server for Genome Nexus

  rest-apicancer-genomicsknowledgebase

  Java

  •

  MIT License

  •43•40•196•6•Updated Oct 11, 2024Oct 11, 2024

• genome-nexus-frontend

  Public
  Frontend for Genome Nexus 🎉

  TypeScript

  •

  MIT License

  •12•6•0•16•Updated Oct 10, 2024Oct 10, 2024

• genome-nexus-java-api-client

  Public
  Java API Client for Genome Nexus

  Java

  •

  MIT License

  •9•1•0•3•Updated Oct 8, 2024Oct 8, 2024

• genome-nexus-importer

  Public
  Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/

  Python

  •

  MIT License

  •16•4•14•5•Updated Aug 28, 2024Aug 28, 2024

• genome-nexus-vep

  Public
  Java spring boot wrapper around VEP

  Java

  •

  MIT License

  •15•3•1•2•Updated Aug 26, 2024Aug 26, 2024

• vcf2maf-lite

  Public
  Python

  •4•0•1•1•Updated Jul 30, 2024Jul 30, 2024

• annotation-tools

  Public
  Tools developed for AACR GENIE to allow annotation of vcf and maf files from a number of centers and merging the results

  Python

  •

  MIT License

  •15•6•15•2•Updated Jul 16, 2024Jul 16, 2024

• nf-gnap

  Public
  Nextflow pipeline used to call the genome-nexus-annotation-pipeline

  Nextflow

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• .github

  Public
  README for Genome Nexus Org Page

  0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

• genome-nexus-cli

  Public
  💻 Command line interface for Genome Nexus 🧬

  nodejstypescriptvcf+ 4cancer-genomicsvariant-annotationjsonmaf-annotation

  TypeScript

  •5•0•3•14•Updated Apr 29, 2023Apr 29, 2023

• g2s

  Public
  A standalone component to provide mappings between protein sequence positions and PDB 3D protein structure models

  Java

  •

  GNU Affero General Public License v3.0

  •9•7•21•0•Updated Dec 1, 2022Dec 1, 2022

• signal

  Public
  Somatic Integration of Germline Alterations in cancer

  TypeScript

  •

  MIT License

  •5•0•0•0•Updated Nov 18, 2022Nov 18, 2022

• generator-jhipster-react-mobx

  Public
  JHipster blueprint with React that uses Mobx for state management

  TypeScript

  •

  Apache License 2.0

  •6•0•0•0•Updated Mar 26, 2022Mar 26, 2022

• ensembl-rest-docker

  Public
  Dockerfile

  •1•0•0•0•Updated Sep 28, 2020Sep 28, 2020

• oncokb-java-api-client

  Public
  Java

  •2•0•0•0•Updated Feb 19, 2020Feb 19, 2020

• heroku-buildpack-mongo

  Public
  Heroku buildpack to run mongo commands

  Shell

  •24•0•0•0•Updated Oct 23, 2017Oct 23, 2017