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    15 repositories

    • portal-style-guide

      Public archive
      Style guide for HuBMAP Portal development.
      styleguideuiuxuser-interfacegehlenborglabhubmap
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Feb 2, 2022Feb 2, 2022

    • portal-images

      Public archive
      Images for portal-ui
      gehlenborglab
      MIT License
      •0•0•2•0•Updated Jan 27, 2022Jan 27, 2022

    • tissue-viewer

      Public archive
      [WIP] Tissue Viewer - Requirements Gathering Phase
      0•0•39•0•Updated Feb 4, 2021Feb 4, 2021

    • collab-slack

      Public archive
      Bespoke collaborative tools that can integrate with the hubmap slack organization
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 4, 2021Feb 4, 2021

    • 4dn-workflow-viz

      Public archive
      Standalone fork of the 4DN workflow visualization React app
      JavaScript
      •0•0•2•0•Updated Jan 28, 2021Jan 28, 2021

    • airflow

      Public archive
      Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
      Python
      •
      Apache License 2.0
      •14k•0•0•0•Updated Sep 25, 2020Sep 25, 2020

    • directory-schema

      Public archive
      Use JSON Schema to validate directory structures
      gehlenborglab
      Python
      •
      MIT License
      •1•2•1•0•Updated Aug 12, 2020Aug 12, 2020

    • search-schema

      Public archive
      JSON Schema for documents in HuBMAP Elasticsearch
      gehlenborglab
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 10, 2020Aug 10, 2020

    • prov-vis

      Public archive
      Wrapper for 4dn-dcic/react-workflow-viz which takes W3C PROV-JSON as input
      JavaScript
      •
      MIT License
      •0•1•11•1•Updated Jul 20, 2020Jul 20, 2020

    • ccf-data-api

      Public archive
      [WIP] A specificaton and set of web service calls to return information about CCF-mapped data
      MIT License
      •0•0•0•0•Updated Jun 18, 2020Jun 18, 2020

    • portal-search

      Public archive
      HuBMAP wrapper for Searchkit
      JavaScript
      •
      MIT License
      •0•0•3•0•Updated May 13, 2020May 13, 2020

    • vitessce-image-loader

      Public archive
      Utilities for loading single & multichannel zarr and tiff images
      TypeScript
      •
      MIT License
      •1•1•1•0•Updated Mar 27, 2020Mar 27, 2020

    • img2zarr

      Public archive
      Python utility for converting images to zarr chunked arrays
      gehlenborglabhubmapvitesscepython
      Python
      •
      MIT License
      •0•0•4•0•Updated Mar 19, 2020Mar 19, 2020

    • hubmap-sample-metadata

      Public archive
      Sample metadata for use in the HuBMAP Portal during development
      Python
      •
      MIT License
      •0•0•15•3•Updated Oct 16, 2019Oct 16, 2019

    • ucsd-snareseq-pipeline

      Public archive
      Shell
      •0•0•0•0•Updated Oct 15, 2019Oct 15, 2019