Repositories list

• gpfjs

  Public
  TypeScript

  •

  MIT License

  •0•0•22•1•Updated Jan 3, 2025Jan 3, 2025

• gpf

  Public
  GPF: Genotypes and Phenotypes in Families

  genomicsvariantsvariant-annotation

  Python

  •

  MIT License

  •0•3•67•1•Updated Jan 3, 2025Jan 3, 2025

• gpf-conda-packaging

  Public
  Shell

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• iossifovlab-gpf-containers

  Public
  Shell

  •0•0•1•0•Updated Jan 3, 2025Jan 3, 2025

• annotation_demo

  Public
  HTML

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• mini_grr

  Public
  HTML

  •

  MIT License

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• snakeobjects

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• sfari-frontpage

  Public
  TypeScript

  •

  MIT License

  •0•0•1•0•Updated Aug 9, 2024Aug 9, 2024

• gpf_gcp_storage

  Public
  Jenkins build for running GCP genotype storage tests

  Shell

  •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• gpf_impala2_storage

  Public
  Shell

  •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• data-hg38-public

  Public
  GPF public data collection

  Shell

  •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

• autpop

  Public
  Tool for exploring models of populations with autism.

  Python

  •

  MIT License

  •0•0•0•0•Updated Apr 24, 2023Apr 24, 2023

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Dec 7, 2022Dec 7, 2022

• ssw

  Public
  Python interface for SIMD Smith-Waterman Library

  C

  •

  Other

  •14•0•0•0•Updated Mar 31, 2022Mar 31, 2022

• data-hg19-empty

  Public
  0•0•0•0•Updated Jan 27, 2022Jan 27, 2022

• IossifovLabFileFormats

  Public
  Descriptions and tools for the custom file formats used in IossifovLab.

  Python

  •0•0•0•0•Updated Dec 16, 2021Dec 16, 2021

• snakeobjectsTutorial

  Public
  repository for the final stage of snakeobjects tutorial

  Python

  •0•0•0•0•Updated Sep 16, 2021Sep 16, 2021

• snakeobjectsTutorialInput

  Public
  input data for the snakeobjectsTutorial

  0•0•0•0•Updated Aug 5, 2021Aug 5, 2021

• denovoInHighAndLowRiskPaper

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 26, 2021Jul 26, 2021

• haplothreadTools

  Public
  Python

  •0•0•0•0•Updated May 4, 2021May 4, 2021

• phaser

  Public
  phasing and Allele Specific Expression from RNA-seq

  Python

  •

  GNU General Public License v3.0

  •35•0•0•0•Updated Oct 28, 2020Oct 28, 2020

• snakemake-gridengine

  Public
  Snakemake profile for the (Sun) Grid Engine queueing system

  Python

  •10•0•0•0•Updated Aug 3, 2020Aug 3, 2020

• mamsdb2

  Public
  Python

  •0•0•0•0•Updated Nov 22, 2019Nov 22, 2019