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@jrflab Reis-Filho Lab

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    7 repositories

    • modules

      Public
      MSKCC Reis-Filho Lab pipeline thingy
      Jupyter Notebook
      •13•16•1•0•Updated Aug 2, 2024Aug 2, 2024

    • puppetlab

      Public
      R
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jul 15, 2022Jul 15, 2022

    • MSK-GRAIL-TECHVAL

      Public archive
      High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
      R
      •
      GNU General Public License v2.0
      •9•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • MSK-BYL-NC

      Public archive
      Alterations in PTEN and ESR1 promote clinical resistance to alpelisib plus aromatase inhibitors
      R
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Mar 27, 2020Mar 27, 2020

    • revmut

      Public archive
      REVertant MUTation Find & Verify
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • sufam

      Public archive
      Super sensitive mutation validator, uses sam/bam and vcf
      Python
      •
      MIT License
      •4•0•0•0•Updated May 15, 2017May 15, 2017

    • fathmm

      Public archive
      The Functional Analysis through Hidden Markov Models Software and Server
      JavaScript
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Sep 8, 2016Sep 8, 2016