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    48 repositories

    • GAMBLR.data

      Public
      Collection of Curated Data for Genomic Analysis of Mature B-cell Lymphomas in R
      R
      •
      MIT License
      •0•2•3•1•Updated Dec 17, 2024Dec 17, 2024

    • GAMBLR.viz

      Public
      Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R
      R
      •
      MIT License
      •0•0•3•1•Updated Dec 17, 2024Dec 17, 2024

    • GAMBLR.results

      Public
      A collection of functions to access results of the Genomic Analysis of Mature B-cell Lymphomas
      R
      •
      MIT License
      •0•0•16•3•Updated Dec 13, 2024Dec 13, 2024

    • GAMBLR.utils

      Public
      Collection of functions that consist of the core functionality of GAMBLR
      R
      •
      MIT License
      •0•0•0•1•Updated Dec 13, 2024Dec 13, 2024

    • GAMBLR.open

      Public
      Database, mining, manipulation and convenience functions for working with genomic data of mature B-cell lymphomas
      R
      •
      MIT License
      •0•0•0•1•Updated Dec 11, 2024Dec 11, 2024

    • GAMBLR.helpers

      Public
      A collection of helper functions to support the functionality of GAMBLR-based packages
      R
      •
      MIT License
      •0•0•1•1•Updated Dec 4, 2024Dec 4, 2024

    • LLMPP

      Public
      Lymphoma Leukemia Molecular Profiling Project
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•6•0•1•Updated Dec 4, 2024Dec 4, 2024

    • GAMBLR.predict

      Public
      Collection of functions and helpers to classify B-cell lymphomas
      R
      •
      Other
      •0•2•0•0•Updated Dec 4, 2024Dec 4, 2024

    • GAMBLR

      Public
      Set of standardized functions to operate with genomic data
      bioinformaticsgenomicscancercancer-researchlymphomalymphoma-classification
      R
      •
      MIT License
      •2•4•15•1•Updated Oct 31, 2024Oct 31, 2024

    • FFPolish

      Public
      Python
      •
      MIT License
      •4•2•1•0•Updated Aug 15, 2024Aug 15, 2024

    • morinlab.github.io

      Public
      Build a lab website in minutes to showcase your research!
      SCSS
      •12•6•0•1•Updated Mar 8, 2024Mar 8, 2024

    • idt_umi_workflow

      Public
      Workflow for processing CAPPSeq data sequenced using IDT's UMIs
      Python
      •1•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • moroncolours

      Public
      Colour schemes made by and used by Morons
      R
      •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • cappseq_snv_pipeline

      Public
      Variant calling workflow for CAPPSeq data
      Python
      •1•0•0•0•Updated Feb 17, 2024Feb 17, 2024

    • lab_scripts

      Public
      Consolidated scripts used by the Morin lab
      Python
      •6•6•1•0•Updated Jan 23, 2024Jan 23, 2024

    • HotMAPS

      Public
      Detects hotspot regions for somatic mutations in 3D protein structures
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Jan 15, 2024Jan 15, 2024

    • llmpp_shiny

      Public
      Dedicated shiny app for variant review
      R
      •0•0•0•1•Updated Nov 15, 2023Nov 15, 2023

    • LLMPP.viz

      Public
      R package for simplifying the use of standardized colours in R
      R
      •0•0•0•0•Updated Aug 4, 2023Aug 4, 2023

    • pyGAMBL

      Public
      Python
      •0•0•0•0•Updated Jul 5, 2023Jul 5, 2023

    • MBB243

      Public
      Lab files for introduction to data analysis for the life sciences
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •4•2•0•0•Updated Jun 30, 2023Jun 30, 2023

    • LymphGenerator

      Public
      The R code behind unified classification system for DLBCL
      R
      •1•5•0•0•Updated Apr 18, 2023Apr 18, 2023

    • targeted_seq_alignment_workflow

      Public
      Snakemake workflow for aligning targeted Illumina sequencing data
      Python
      •0•1•0•0•Updated Apr 13, 2023Apr 13, 2023

    • Meerkat

      Public
      Deploying Meerkat for GAMBL
      Perl
      •2•0•0•0•Updated Feb 28, 2023Feb 28, 2023

    • mbb

      Public
      MBB course summaries
      HTML
      •0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • WisecondorXtena

      Public
      An improved version of the copy number caller, WisecondorX, that now infers purity and produces improved copy number calls from lpWGS data
      Python
      •0•2•0•0•Updated Jul 25, 2022Jul 25, 2022

    • g3viz

      Public
      Lollipop-diagram to interactively visualize genetic mutations
      JavaScript
      •
      Other
      •19•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • ggsci

      Public
      🦄 Scientific journal and sci-fi themed color palettes for ggplot2
      HTML
      •
      GNU General Public License v3.0
      •71•1•0•0•Updated Feb 24, 2022Feb 24, 2022

    • dryclean

      Public
      Irons out wrinkles in noisy coverage data using robust PCA
      R
      •14•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • ADVISE

      Public
      Workflow and analysis pipeline for the ADVISE project
      Python
      •1•0•0•0•Updated Sep 21, 2021Sep 21, 2021

    • JaBbA

      Public
      MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
      R
      •
      MIT License
      •26•0•0•0•Updated Aug 25, 2021Aug 25, 2021