NCBI - National Center for Biotechnology Information/NLM/NIH

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159 repositories

ncbi-cxx-toolkit-public
Public
NCBI C++ Toolkit package sources
C++
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Other
•21•56•1•0•Updated Nov 28, 2024Nov 28, 2024
ncbi-vdb
Public
ncbi-vdb
C
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Other
•39•89•10•6•Updated Nov 27, 2024Nov 27, 2024
tree-tool
Public
Incremental building of phylogenetic distance trees
bioinformatics evolution phylogenetic-trees data-analysis distance-measures bioinformatics-tool
HTML
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Other
•7•19•0•1•Updated Nov 27, 2024Nov 27, 2024
sra-tools
Public
SRA Tools
C
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Other
•248•1.1k•77•4•Updated Nov 27, 2024Nov 27, 2024
datasets
Public
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
ncbi genomics-data
Jupyter Notebook
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Other
•42•371•24•0•Updated Nov 26, 2024Nov 26, 2024
clinvar
Public
ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at '[email protected]' with any questions or comments.
HTML
•14•70•4•0•Updated Nov 25, 2024Nov 25, 2024
ncbi-cxx-toolkit-conan
Public
NCBI C++ Toolkit package recipe
Python
•8•5•0•0•Updated Nov 25, 2024Nov 25, 2024
cxx-toolkit
Public
HTML
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The Unlicense
•45•19•0•0•Updated Nov 22, 2024Nov 22, 2024
ncbi-vdb-conan
Public
Conan package recipe for NCBI VDB Toolkit
Python
•1•0•0•0•Updated Nov 22, 2024Nov 22, 2024
fcs
Public
Foreign Contamination Screening caller scripts and documentation
Other
•14•109•10•0•Updated Nov 19, 2024Nov 19, 2024
ncbi-logging
Public
Log monitoring and gathering infrastructure to feed analytics
C++
•8•5•0•1•Updated Nov 19, 2024Nov 19, 2024
egapx
Public
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
Nextflow
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Other
•9•93•6•1•Updated Nov 18, 2024Nov 18, 2024
icn3d
Public
web-based protein structure viewer and analysis tool interactively or in batch mode
nodejs delphi webgl vr ar jupyter-notebook chemical protein snp nucleotide
JavaScript
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Other
•42•154•6•2•Updated Nov 16, 2024Nov 16, 2024
stxtyper
Public
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
bioinformatics genomics pathogen escherichia-coli bioinformatics-tool virulence-genes
C++
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Other
•1•9•0•0•Updated Nov 16, 2024Nov 16, 2024
amr
Public
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
genomics pathogen antibiotic-resistance bioinformatics
C++
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Other
•39•277•12•0•Updated Nov 13, 2024Nov 13, 2024
pgap
Public
NCBI Prokaryotic Genome Annotation Pipeline
Common Workflow Language
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Other
•88•316•5•0•Updated Nov 13, 2024Nov 13, 2024
nongenomic-evolution-of-tumor-subclones
Public
Python
•1•2•0•0•Updated Nov 5, 2024Nov 5, 2024
SpaceProfiler
Public
Jupyter Notebook
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
ribovore
Public
Perl
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Other
•5•13•3•0•Updated Oct 24, 2024Oct 24, 2024
SKESA
Public
SKESA assembler
C++
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Other
•19•112•17•2•Updated Oct 11, 2024Oct 11, 2024
workshop-asm-ngs-2024
Public
Pre-conference workshop for ASM NGS 2024
1•5•0•0•Updated Oct 10, 2024Oct 10, 2024
ncbi_doc_template
Public
CSS
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The Unlicense
•5•3•0•0•Updated Oct 9, 2024Oct 9, 2024
rapt
Public
Read Assembly and Annotation Pipeline Tool
ngs genome-annotation pgap annotation-pipeline skesa
17•55•14•0•Updated Oct 3, 2024Oct 3, 2024
gtax
Public
Python
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Other
•4•5•2•0•Updated Oct 3, 2024Oct 3, 2024
AF2_benchmark
Public
Jupyter Notebook
•3•13•0•0•Updated Sep 20, 2024Sep 20, 2024
CF-random
Public
Python
•2•3•0•0•Updated Sep 17, 2024Sep 17, 2024
pubchem-align3d
Public
This is a generic C++ library that can be used to rapidly align two small molecules in 3D space, with shape - and optionally color - Tanimoto scoring. Included is a sample RDKit application whereby any two SDF-format chemicals are read in and aligned.
C++
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Other
•1•8•0•0•Updated Sep 16, 2024Sep 16, 2024
SuPER
Public
Python
•4•5•0•0•Updated Sep 9, 2024Sep 9, 2024
elastic-blast
Public
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
bioinformatics blast ncbi
Python
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Other
•15•46•2•0•Updated Sep 1, 2024Sep 1, 2024
DbGaP-FHIR-API-Docs
Public
The documentation repository for the dbGaP FHIR API.
documentation fhir phenotypes
Jupyter Notebook
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Other
•3•8•5•0•Updated Aug 28, 2024Aug 28, 2024