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@obiba Open Source Software for Epidemiology

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    130 repositories

    • agate

      Public
      OBiBa's user ID provider.
      Java
      •
      GNU General Public License v3.0
      •7•4•7•21•Updated Jan 5, 2025Jan 5, 2025

    • mica2

      Public
      Mica is a web portal for epidemiological study consortia.
      Java
      •
      GNU General Public License v3.0
      •15•11•76•19•Updated Dec 23, 2024Dec 23, 2024

    • opal

      Public
      OBiBa’s core database application for biobanks or epidemiological studies.
      Java
      •
      GNU General Public License v3.0
      •22•31•24•3•Updated Dec 23, 2024Dec 23, 2024

    • docker-mica

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 22, 2024Dec 22, 2024

    • docker-agate

      Public
      Shell
      •
      GNU General Public License v3.0
      •3•0•1•0•Updated Dec 22, 2024Dec 22, 2024

    • docker-opal

      Public
      Shell
      •
      GNU General Public License v3.0
      •11•7•5•0•Updated Dec 22, 2024Dec 22, 2024

    • obiba.github.io

      Public
      Obiba Website
      HTML
      •2•0•0•1•Updated Dec 18, 2024Dec 18, 2024

    • mica-tables-spss

      Public
      Mica study table source plugin based on a SPSS file
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • magma-datasource-spss

      Public
      Magma datasource to read SPSS files
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • datashield-deployment

      Public template
      Deployment of OBiBa for DataSHIELD
      Makefile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • mica-doc

      Public
      Mica documentation
      Python
      •2•0•1•0•Updated Dec 15, 2024Dec 15, 2024

    • rock

      Public
      R server with a REST API
      Java
      •
      GNU General Public License v3.0
      •1•3•2•1•Updated Dec 15, 2024Dec 15, 2024

    • docker-rock

      Public
      Rock R server in a Docker container
      Shell
      •1•0•0•0•Updated Dec 15, 2024Dec 15, 2024

    • plugins

      Public
      OBiBa plugins repository
      0•0•0•0•Updated Dec 14, 2024Dec 14, 2024

    • agate-doc

      Public
      Agate documentation
      Python
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • mica-search-es8

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Dec 10, 2024Dec 10, 2024

    • obiba-home

      Public
      Obiba development environment
      HTML
      •2•0•0•0•Updated Dec 7, 2024Dec 7, 2024

    • opal-datasource-limesurvey

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•1•1•Updated Dec 3, 2024Dec 3, 2024

    • obiba-commons

      Public
      Reusable code for persistence (hibernate), security, spring and wicket.
      Java
      •9•5•0•0•Updated Nov 24, 2024Nov 24, 2024

    • docker-r

      Public
      Docker image with R inside and a lot of system libs
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • magma

      Public
      Data and meta-data abstraction layer.
      Java
      •
      GNU General Public License v3.0
      •14•6•11•0•Updated Nov 8, 2024Nov 8, 2024

    • opal-doc

      Public
      Opal documentation
      Python
      •3•2•1•0•Updated Oct 13, 2024Oct 13, 2024

    • jennite-vcf-store

      Public
      VCF store
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • opal-analysis-validate

      Public
      Opal analysis plugin for data quality assurance based on the validate R package
      R
      •
      GNU General Public License v3.0
      •0•0•2•1•Updated Oct 11, 2024Oct 11, 2024

    • opal-datasource-spss

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Oct 11, 2024Oct 11, 2024

    • opal-datasource-redcap

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Oct 11, 2024Oct 11, 2024

    • opal-datasource-readxl

      Public
      Opal datasource using R packages readxl and writexl
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • opal-datasource-readr

      Public
      Opal datasource using R package readr
      Java
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Oct 11, 2024Oct 11, 2024

    • opal-datasource-googlesheets4

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • opalr

      Public
      Opal R and Datashield utils
      R
      •3•3•3•0•Updated Sep 18, 2024Sep 18, 2024