Open Microscopy Environment

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339 repositories

upptime
Public
📈 Uptime monitor and status page for OME, powered by @upptime
uptime-monitor status-page upptime
Markdown
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MIT License
•1•1•0•0•Updated Nov 24, 2024Nov 24, 2024
omero-web
Public
Django-based OMERO.web client
python client django web omero
Python
•31•17•127•9•Updated Nov 22, 2024Nov 22, 2024
omero-certificates
Public
OMERO server certificate management plugin
plugin cli deployment server certificates omero
Python
•
GNU General Public License v2.0
•7•0•2•1•Updated Nov 22, 2024Nov 22, 2024
omero-build
Public
OMERO top-level build for all components
build omero meta-repo
Dockerfile
•7•1•3•0•Updated Nov 22, 2024Nov 22, 2024
omero-cli-zarr
Public
omero zarr ngff ome-zarr-converter
Python
•
GNU General Public License v2.0
•10•16•17•4•Updated Nov 22, 2024Nov 22, 2024
omero-upload
Public
OMERO Python library for uploading files
python plugin cli upload omero
Python
•
GNU General Public License v2.0
•4•1•0•0•Updated Nov 22, 2024Nov 22, 2024
omero-py
Public
Python project containing Ice remoting code for OMERO
python component lib omero
Python
•
GNU General Public License v2.0
•32•22•74•16•Updated Nov 22, 2024Nov 22, 2024
omero-webtest
Public
An OMERO.web app for prototypes and examples
webapp omero
HTML
•
GNU Affero General Public License v3.0
•12•3•1•0•Updated Nov 22, 2024Nov 22, 2024
omero-cli-duplicate
Public
OMERO command-line tool for duplicating database objects
python plugin cli command omero
Python
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GNU General Public License v2.0
•8•2•4•1•Updated Nov 22, 2024Nov 22, 2024
ome-zarr-py
Public
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
ome zarr ngff ome-zarr
Python
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Other
•54•157•59•13•Updated Nov 22, 2024Nov 22, 2024
omero-weberror
Public
An OMERO.web app for generating Web errors
webapp omero
Python
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GNU Affero General Public License v3.0
•9•0•0•0•Updated Nov 22, 2024Nov 22, 2024
omero-python-superbuild
Public
OMERO build for Python server components
python build omero meta-repo
4•0•1•0•Updated Nov 22, 2024Nov 22, 2024
omero-plugins
Public
Collection of OMERO extensions (plugins, apps)
ecosystem build plugins omero meta-repo
7•0•1•5•Updated Nov 22, 2024Nov 22, 2024
omero-documentation
Public
Sphinx-based documentation for the Open Microscopy Environment
documentation omero ome
Python
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BSD 2-Clause "Simplified" License
•51•22•27•5•Updated Nov 22, 2024Nov 22, 2024
ngff
Public
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
data-science cloud spec bioimaging file-formats
Bikeshed
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Other
•41•118•91•17•Updated Nov 22, 2024Nov 22, 2024
www.openmicroscopy.org
Public
OME main website
jekyll-site ome
HTML
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Creative Commons Attribution 4.0 International
•22•5•10•2•Updated Nov 22, 2024Nov 22, 2024
meeting-minutes
Public
Minutes from the weekly OME community meetings
Creative Commons Attribution 4.0 International
•6•0•1•0•Updated Nov 21, 2024Nov 21, 2024
napari-ome-zarr
Public
A napari plugin for zarr backed OME-NGFF images
napari-plugin zarr ngff python
Python
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BSD 3-Clause "New" or "Revised" License
•21•30•22•6•Updated Nov 21, 2024Nov 21, 2024
omero-parade
Public
OMERO.web plugin for displaying Dataset thumbnails or Plates in webclient center panel
webapp omero
JavaScript
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GNU Affero General Public License v3.0
•12•1•34•3•Updated Nov 21, 2024Nov 21, 2024
omero-cli-server
Public
CLI plugin for managing an OMERO.server
Python
•
GNU General Public License v2.0
•3•1•0•4•Updated Nov 21, 2024Nov 21, 2024
omero-mapr
Public
An OMERO.web app allowing to browse the data through attributes linked to the image
plugin image viewer omero
Python
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GNU Affero General Public License v3.0
•13•5•17•3•Updated Nov 21, 2024Nov 21, 2024
omero-cli-render
Public
OMERO command-line tool for rendering
python plugin cli command omero
Python
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GNU General Public License v2.0
•10•2•6•6•Updated Nov 21, 2024Nov 21, 2024
omero-dropbox
Public
OMERO.dropbox server for watching directories
python component lib omero omero-import
Python
•
GNU General Public License v2.0
•6•1•2•1•Updated Nov 21, 2024Nov 21, 2024
omero-gallery
Public
webapp omero
JavaScript
•
GNU Affero General Public License v3.0
•15•5•20•1•Updated Nov 21, 2024Nov 21, 2024
spec-prod
Public
GitHub Action to build ReSpec/Bikeshed specs, validate output and publish to GitHub pages or W3C
JavaScript
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MIT License
•21•0•0•0•Updated Nov 21, 2024Nov 21, 2024
ome2024-ngff-challenge
Public
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
ome-ngff ome-zarr-converter
Python
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BSD 3-Clause "New" or "Revised" License
•14•15•7•4•Updated Nov 21, 2024Nov 21, 2024
omero-server-docker
Public
OMERO.server production docker image
docker ome openmicroscopy omero-server omero
Shell
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BSD 2-Clause "Simplified" License
•27•12•11•8•Updated Nov 21, 2024Nov 21, 2024
omero-web-docker
Public
OMERO.web production docker image
omero ome openmicroscopy omero-web docker
Makefile
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BSD 2-Clause "Simplified" License
•20•6•12•8•Updated Nov 21, 2024Nov 21, 2024
openmicroscopy
Public
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …
python image database server omero java
Java
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GNU General Public License v2.0
•102•200•26•5•Updated Nov 21, 2024Nov 21, 2024
omero-marshal
Public
OMERO marshalling infrastructure
model marshalling pip omero
Python
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GNU General Public License v2.0
•11•3•4•4•Updated Nov 21, 2024Nov 21, 2024