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    • Python
      MIT License
      42200Updated Nov 9, 2024Nov 9, 2024
    • SPACE2

      Public
      Tool for rapid clustering of antibody models by the structure of their CDRs.
      Python
      BSD 3-Clause "New" or "Revised" License
      61900Updated Nov 1, 2024Nov 1, 2024
    • CaLM

      Public
      Protein language model trained on coding DNA
      Python
      BSD 3-Clause "New" or "Revised" License
      103860Updated Oct 20, 2024Oct 20, 2024
    • Humatch

      Public
      Fast, gene-specific joint humanisation of antibody heavy and light chains.
      Python
      BSD 3-Clause "New" or "Revised" License
      4400Updated Sep 30, 2024Sep 30, 2024
    • AntiFold

      Public
      Improved antibody structure-based design using inverse folding
      Python
      BSD 3-Clause "New" or "Revised" License
      117520Updated Sep 17, 2024Sep 17, 2024
    • CoPriNet

      Public
      Deep learning for compound price prediction
      Python
      MIT License
      61900Updated Aug 22, 2024Aug 22, 2024
    • AbLang2

      Public
      An antibody-specific language model focusing on NGL prediction
      Python
      BSD 3-Clause "New" or "Revised" License
      52200Updated Aug 22, 2024Aug 22, 2024
    • AEV-PLIG

      Public
      Python
      Other
      2200Updated Aug 19, 2024Aug 19, 2024
    • p-IgGen

      Public
      p-IgGen: A Generative Paired Antibody Language Model
      Python
      BSD 3-Clause "New" or "Revised" License
      2700Updated Jul 10, 2024Jul 10, 2024
    • kasearch

      Public
      KA-Search: Rapid and exhaustive sequence identity search of known antibodies
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      92000Updated Jul 9, 2024Jul 9, 2024
    • PLAbDab

      Public
      The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      62300Updated Jul 8, 2024Jul 8, 2024
    • cesped

      Public
      Cryo-EM Supervised Pose Estimation Dataset utilities
      Python
      BSD 3-Clause "New" or "Revised" License
      1100Updated Jul 2, 2024Jul 2, 2024
    • Predict the structure of immune receptor proteins
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      3812001Updated Jun 25, 2024Jun 25, 2024
    • ANARCI

      Public
      Antibody Numbering and Antigen Receptor ClassIfication
      Python
      BSD 3-Clause "New" or "Revised" License
      921884511Updated May 21, 2024May 21, 2024
    • A comparison of the binding sites of antibodies and single-domain antibodies
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      0200Updated May 2, 2024May 2, 2024
    • Design and refine high affinity antibody libraries
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1100Updated Mar 29, 2024Mar 29, 2024
    • Python
      BSD 3-Clause "New" or "Revised" License
      3600Updated Mar 26, 2024Mar 26, 2024
    • DEVELOP

      Public
      Python
      Other
      175600Updated Mar 14, 2024Mar 14, 2024
    • Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse
      Python
      MIT License
      13300Updated Feb 22, 2024Feb 22, 2024
    • Given an RDKit molecule that does not sanitise, correct it until it does
      Python
      MIT License
      7000Updated Feb 21, 2024Feb 21, 2024
    • DeepCoy

      Public
      Python
      Other
      163000Updated Feb 5, 2024Feb 5, 2024
    • Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.
      R
      BSD 3-Clause "New" or "Revised" License
      1300Updated Jan 24, 2024Jan 24, 2024
    • Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
      Python
      BSD 3-Clause "New" or "Revised" License
      62500Updated Jan 19, 2024Jan 19, 2024
    • An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)
      Python
      MIT License
      4000Updated Jan 17, 2024Jan 17, 2024
    • Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
      Python
      MIT License
      5000Updated Dec 8, 2023Dec 8, 2023
    • AbLang

      Public
      AbLang: A language model for antibodies
      Python
      BSD 3-Clause "New" or "Revised" License
      2412821Updated Sep 22, 2023Sep 22, 2023
    • SCALOP

      Public
      Python
      BSD 3-Clause "New" or "Revised" License
      3721Updated Sep 21, 2023Sep 21, 2023
    • Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      9000Updated Jun 10, 2023Jun 10, 2023
    • hummus

      Public template
      Code associated with generating figures from Richardson & Binter et al, 2022.
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1000Updated Apr 5, 2023Apr 5, 2023
    • Paragraph

      Public
      Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
      Python
      BSD 3-Clause "New" or "Revised" License
      113300Updated Mar 18, 2023Mar 18, 2023