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    7 repositories

    • HAFpipe-line

      Public
      calculate haplotype-derived allele frequencies for pool-seq samples
      Shell
      •1•7•1•0•Updated Nov 11, 2022Nov 11, 2022

    • cancer-HRI

      Public
      Estimating patterns of selection in tumors stratified by mutational burden to account for Hill-Robertson Interference
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 14, 2022Sep 14, 2022

    • tuba-seq

      Public
      Analysis pipeline and utilities for TUmor BArcoded DNA Sequencing
      Python
      •
      MIT License
      •2•3•1•0•Updated Jun 30, 2022Jun 30, 2022

    • POOLSEQ1_fastq_to_bam

      Public
      scripts for QC-ing paired-end fastq files and mapping them to a reference genome
      Shell
      •0•0•0•0•Updated Feb 21, 2020Feb 21, 2020

    • POOLSEQ2_bam_to_rawAF

      Public
      scripts to calculate allele frequencies at segregating sites from bam files for a set of pool-seq samples
      Shell
      •0•0•0•0•Updated Oct 26, 2019Oct 26, 2019

    • OT2-Protocols

      Public
      Protocols for the Petrov Lab OT-2 Robot (WALL-E)
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 21, 2018Aug 21, 2018

    • bioinformatics-one-liners

      Public
      my collection of bioinformatics one liners that is useful in my day-to-day work
      MIT License
      •128•0•0•0•Updated Jun 21, 2017Jun 21, 2017