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@pfmc-assessments PFMC assessments

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    31 repositories

    • PacFIN.Utilities

      Public
      R code to manipulate data from the PacFIN database for assessments
      R
      •
      Other
      •2•7•43•1•Updated Dec 28, 2024Dec 28, 2024

    • yellowtail_2025

      Public
      Assessment repository for the 2025 assessment of the northern stock of Yellowtail rockfish off the West Coast of the U.S.
      stockassessment
      Scheme
      •0•0•6•0•Updated Dec 27, 2024Dec 27, 2024

    • CA_quillback_rockfish_2025

      Public
      Quillback rockfish assessment for California in 2025
      R
      •
      Other
      •0•0•13•0•Updated Dec 26, 2024Dec 26, 2024

    • pfmc_assessment_handbook

      Public
      PFMC Groundfish Assessment Best Practices Handbook
      TeX
      •1•2•9•0•Updated Dec 24, 2024Dec 24, 2024

    • nwfscSurvey

      Public
      Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments
      R
      •8•10•23•0•Updated Dec 23, 2024Dec 23, 2024

    • sablefish_2025

      Public
      Assessment repository for the 2025 assessment of sablefish off the West Coast of the U.S.
      stockassessment
      JavaScript
      •
      Other
      •0•0•22•0•Updated Dec 19, 2024Dec 19, 2024

    • california-data

      Public
      This serves as a space to discuss data related to stock assessments for California.
      R
      •1•3•0•0•Updated Dec 18, 2024Dec 18, 2024

    • indexwc

      Public
      Estimate indices of abundance for west coast fish species
      R
      •2•2•15•2•Updated Dec 16, 2024Dec 16, 2024

    • nwfscDiscard

      Public
      Code to summarize discard rates and totals from the West Coast Groundfish Observer Program
      R
      •0•0•3•0•Updated Dec 12, 2024Dec 12, 2024

    • nwfscDiag

      Public
      Tool to run diagnostics for U.S. West Coast groundfish stock assessments using Stock Synthesis
      R
      •2•0•10•0•Updated Nov 13, 2024Nov 13, 2024

    • Assessment_Class

      Public
      2025 UW Stock assessment class
      HTML
      •0•11•0•0•Updated Nov 5, 2024Nov 5, 2024

    • lingcod

      Public
      stockassessment
      Scheme
      •2•2•9•0•Updated Oct 28, 2024Oct 28, 2024

    • PEPtools

      Public
      Tools for those in the Population Ecology Program of the NWFSC
      R
      •
      Other
      •0•1•12•0•Updated Oct 23, 2024Oct 23, 2024

    • petrale

      Public
      Petrale Sole stock assessment for the U.S. West Coast
      stockassessment
      R
      •
      Creative Commons Zero v1.0 Universal
      •3•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • AgeingError

      Public
      Wrapper for tool to estimate ageing error given double-reads of hard structures (e.g., otoliths)
      R
      •5•9•9•0•Updated Sep 17, 2024Sep 17, 2024

    • sa4ss

      Public
      Generate a stock assessment document from Stock Synthesis output
      rmarkdownbookdownstock-synthesisr
      TeX
      •
      Other
      •7•12•29•3•Updated Aug 2, 2024Aug 2, 2024

    • canary_2023

      Public
      stockassessment
      Scheme
      •
      Other
      •1•5•11•0•Updated May 31, 2024May 31, 2024

    • rebuilder

      Public
      R
      •0•0•2•0•Updated Apr 15, 2024Apr 15, 2024

    • quillback_rockfish_2021

      Public
      stockassessment
      TeX
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • copper_rockfish_2023

      Public
      stockassessment
      TeX
      •0•2•4•0•Updated Mar 15, 2024Mar 15, 2024

    • PFMC-SIS

      Public
      Getting assessment results into the Species Information System
      R
      •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

    • sablefish

      Public
      Status of sablefish as reported to the Pacific Fisheries Management Council
      stockassessment
      Scheme
      •
      Other
      •0•1•3•0•Updated Dec 19, 2023Dec 19, 2023

    • shortspine_thornyhead_2023

      Public
      2023 West Coast stock assessment for shortspine thornyhead
      stockassessment
      Scheme
      •6•6•3•0•Updated Nov 27, 2023Nov 27, 2023

    • VASTWestCoast

      Public
      VAST for the NWFSC West Coast data
      R
      •
      Other
      •1•5•27•1•Updated Nov 14, 2023Nov 14, 2023

    • .github

      Public
      0•0•1•0•Updated Jun 19, 2023Jun 19, 2023

    • nwfscMapping

      Public archive
      Mapping code for NWFSC data
      R
      •1•1•0•0•Updated Jun 13, 2023Jun 13, 2023

    • geostatistical_delta-GLMM

      Public archive
      Tool for geostatistical analysis of survey data, for use when estimating an index of abundance
      C++
      •17•20•21•3•Updated Jun 13, 2023Jun 13, 2023

    • nwfscDeltaGLM

      Public archive
      Bayesian stratified delta-GLMM software for standardizing fishery-independent index data for U.S. West Coast
      R
      •5•12•7•1•Updated Jun 13, 2023Jun 13, 2023

    • indicators

      Public
      Environmental indicators used to inform estimates with PFMC groundfish stock assessments.
      R
      •0•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • RecFIN

      Public
      Working with recreational data for the US West Coast
      R
      •
      GNU General Public License v3.0
      •0•0•6•0•Updated Nov 18, 2022Nov 18, 2022