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@reznik-lab Computational Cancer Metabolism @ MSKCC

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    19 repositories

    • rrna-hotspots

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • mtdna-dlp

      Public
      scripts to generate figures/tables for mtDNA DLP+ paper
      Perl
      •
      MIT License
      •1•2•2•0•Updated Oct 25, 2024Oct 25, 2024

    • tsg_biallelic

      Public
      Public repo for biallelic project
      R
      •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • UnitedMet

      Public
      A Bayesian probabilistic method to predict metabolic phenotypes from transcriptomic data
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • bmi_genomics

      Public
      R
      •0•1•0•0•Updated Apr 29, 2024Apr 29, 2024

    • RNA_biomarker

      Public
      Python
      •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • IsoLearner

      Public
      Predicting isotopologue counts from bulk unlabeled metabolomics data
      Jupyter Notebook
      •0•3•0•0•Updated Nov 4, 2023Nov 4, 2023

    • engineered-mtDNA-mutation-in-tumor

      Public
      MIT License
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • hurthle-cell-carcinoma-integrated-analysis

      Public
      Hurthle cell carcinoma integrated analysis
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • IsoLearner-GUI

      Public
      GUI for IsoLearner Pipeline
      Python
      •0•0•0•0•Updated Aug 11, 2023Aug 11, 2023

    • rcc_coevolution

      Public
      R
      •0•1•0•0•Updated Jun 21, 2023Jun 21, 2023

    • metabolomics_pipeline

      Public
      collections of script to analyze bulk metabolomics data
      MIT License
      •0•1•0•0•Updated May 3, 2023May 3, 2023

    • CAMP-shiny-app

      Public
      cAMP data portal shiny version
      R
      •
      MIT License
      •0•3•0•0•Updated Apr 27, 2023Apr 27, 2023

    • pancancer-metabolomics

      Public
      pancancer metabolomics
      R
      •
      MIT License
      •0•8•0•0•Updated Dec 10, 2022Dec 10, 2022

    • MIRTH

      Public
      Metabolite Imputation via Rank Transformation and Harmonization
      Jupyter Notebook
      •
      Other
      •1•3•1•0•Updated Jul 6, 2022Jul 6, 2022

    • mtdna-mutations

      Public
      scripts to generate figures/tables from Gorelick et al. Nat Metab, 2021
      R
      •
      MIT License
      •5•5•0•0•Updated Feb 19, 2022Feb 19, 2022

    • metabologram

      Public
      Make metabologram that integrate information from metabolomics and gene expression data
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 8, 2021Mar 8, 2021

    • DNApooling_RD

      Public
      R scripts from the study by DiNatale RG et al. 'Multiregional DNA pooling overcomes intratumoral heterogeneity in clinical sequencing of tumors'
      R
      •0•1•0•0•Updated May 17, 2020May 17, 2020

    • pancanmet_analysis

      Public
      Software and analysis of metabolism studies across multiple cancer types
      HTML
      •
      GNU Lesser General Public License v3.0
      •13•1•0•0•Updated Sep 5, 2017Sep 5, 2017