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@rsa-tools Regulatory Sequence Analysis Tools (RSAT)

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    15 repositories

    • rsat-code

      Public
      This repo contains the code required to run a local version of the software suite Regulatory Sequence Analysis Tools (RSAT).
      Perl
      •
      GNU Affero General Public License v3.0
      •7•6•3•0•Updated Jan 24, 2025Jan 24, 2025

    • motif_databases

      Public
      Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)
      HCL
      •3•10•0•0•Updated Jan 7, 2025Jan 7, 2025

    • installing-RSAT

      Public
      Installation guides for the Regulatory Sequence Analysis Tools (RSAT) software suite
      HTML
      •
      Apache License 2.0
      •4•1•9•0•Updated Sep 2, 2024Sep 2, 2024

    • rsat-conda

      Public
      code for conda packages (Biohackathon 2018)
      Shell
      •0•0•1•0•Updated Aug 21, 2024Aug 21, 2024

    • managing-RSAT

      Public
      Management guide for Regulatory Sequence Analysis Tools (RSAT) servers: organisms, temp files, users and updates
      HTML
      •
      Apache License 2.0
      •0•0•1•0•Updated Jul 31, 2024Jul 31, 2024

    • course

      Public
      Course on analysis of regulatory sequences
      CSS
      •0•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • using-RSAT

      Public
      User guides for the Regulatory Sequence Analysis Tools (RSAT)
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 8, 2022Apr 8, 2022

    • teaching

      Public
      We portail to the training material for the Regulatory Sequence Analysis Tools (RSAT)
      CSS
      •1•1•0•0•Updated Apr 8, 2022Apr 8, 2022

    • sample_outputs

      Public
      HCL
      •0•0•0•0•Updated Mar 3, 2022Mar 3, 2022

    • demo_files

      Public
      Demo files for testing RSAT tools
      HCL
      •
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Feb 27, 2022Feb 27, 2022

    • motif_discovery_clusters

      Public
      This tutorial explains step-by-step how to discover DNA motifs within clusters of promoter sequences
      Apache License 2.0
      •1•3•0•0•Updated Oct 9, 2020Oct 9, 2020

    • supp-material-publications

      Public
      HCL
      •0•0•0•0•Updated Sep 21, 2019Sep 21, 2019

    • rsat-snakemake

      Public
      Snakemake rules and workflows using the RSAT suite
      Makefile
      •0•1•0•0•Updated Jun 28, 2019Jun 28, 2019

    • RSAT_20y

      Public
      Training session for RSAT 20th Anniversary Workshop organised in Paris (France), May 16-18, 2018
      JavaScript
      •0•0•0•0•Updated May 17, 2018May 17, 2018

    • tutorial_eccb14

      Public
      Tutorial T01 presented at ECCB conference 2014
      Game Maker Language
      •0•0•0•0•Updated Feb 11, 2015Feb 11, 2015