Repositories list

• merge-multisample-vcf

  Public
  Python

  •0•1•4•0•Updated Feb 26, 2025Feb 26, 2025

• sm-calling

  Public
  Python

  •

  MIT License

  •0•0•9•0•Updated Jan 29, 2025Jan 29, 2025

• sm-alignment

  Public
  Python

  •

  MIT License

  •0•0•19•0•Updated Jan 22, 2025Jan 22, 2025

• apa-sequencing

  Public
  Code for the aldosterone-producing adenoma sequencing project

  Python

  •

  MIT License

  •0•0•12•0•Updated Jan 20, 2025Jan 20, 2025

• plasmicheck

  Public
  Detect and quantify plasmid DNA contamination in sequencing data

  bioinformaticsgenomicsnext-generation-sequencing+ 4plasmidcontamination-detectionminimap2splicing

  Python

  •

  MIT License

  •0•0•42•0•Updated Jan 20, 2025Jan 20, 2025

• variantcentrifuge

  Public
  A pipeline for filtering annotated variant call format files

  geneticsvcfbcftools+ 5snpeffrare-variant-analysisrare-diseasekidney-diseasesnpsift

  Python

  •

  MIT License

  •0•0•23•0•Updated Jan 20, 2025Jan 20, 2025

• sm-vcf-annotation

  Public
  Snakemake scripts to annotate VCF files using SnpEff and SnpSift

  Python

  •

  MIT License

  •0•0•5•0•Updated Jan 7, 2025Jan 7, 2025

• vcf-filtering

  Public
  A collection of scripts for filtering annotated variant call format files

  geneticsvcfbcftools+ 5snpeffrare-variant-analysisrare-diseasekidney-diseasesnpsift

  Shell

  •

  MIT License

  •1•4•34•0•Updated Dec 17, 2024Dec 17, 2024

• command-chest

  Public
  A collection of assorted tools, command lines and scripts

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 7, 2023Dec 7, 2023

• gckd_multisample_vcf

  Public
  Commands to merge and annotate GCKD single sample VCFs

  Shell

  •

  MIT License

  •0•0•3•0•Updated Oct 30, 2023Oct 30, 2023