Repositories list

• multiomics-data-analysis-and-integration-training

  Public
  HTML

  •

  Other

  •7•19•1•0•Updated Feb 27, 2025Feb 27, 2025

• ConsensusOPLS

  Public
  HTML

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 27, 2025Feb 27, 2025

• NGS-longreads-training

  Public
  Shell

  •

  Other

  •3•12•9•0•Updated Feb 27, 2025Feb 27, 2025

• EPD

  Public
  The Eukaryotic Promoter Database (EPD) website

  promoterstranscription-start-siteeukaryotic+ 1eukaryotic-transcription-signal

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• obelisk-docker

  Public
  Shell

  •0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• queryLibrary

  Public
  Collection of OMOP predefined queries.

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• sparql-examples-utils

  Public
  A tool to maintain and test your SPARQL examples

  qualitysparqlrdf

  Java

  •

  Other

  •15•5•14•1•Updated Feb 24, 2025Feb 24, 2025

• genome-jumper

  Public
  Genome Jumper

  C#

  •

  Other

  •0•2•0•0•Updated Feb 24, 2025Feb 24, 2025

• genome-jumper-ios

  Public
  C#

  •

  Other

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• sparql-llm

  Public
  🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

  sparqlsparql-query-builderexpasy+ 1llm

  Jupyter Notebook

  •

  MIT License

  •2•26•1•0•Updated Feb 24, 2025Feb 24, 2025

• training-collection

  Public
  Collection of bioinformatics training materials

  Python

  •

  Other

  •184•1k•1•0•Updated Feb 23, 2025Feb 23, 2025

• single-cell-python-training

  Public
  HTML

  •

  Creative Commons Attribution 4.0 International

  •0•3•0•0•Updated Feb 23, 2025Feb 23, 2025

• spatial-transcriptomics-training

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •1•2•1•0•Updated Feb 23, 2025Feb 23, 2025

• glittr-stats

  Public
  General statistics of Glittr.org. Comes with the manuscript.

  PostScript

  •0•1•0•0•Updated Feb 23, 2025Feb 23, 2025

• cancer-variants-training

  Public
  Lua

  •

  Creative Commons Attribution 4.0 International

  •2•4•0•0•Updated Feb 23, 2025Feb 23, 2025

• sparql-examples

  Public
  A set of SPARQL examples that are used in different SIB resources

  HTML

  •

  Other

  •15•14•5•3•Updated Feb 20, 2025Feb 20, 2025

• kgsteward

  Public
  Knowledge Graph Steward - Command line tool to help manage RDF store

  Python

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Feb 19, 2025Feb 19, 2025

• introduction-to-unix

  Public
  Introduction to Linux and the Bash shell

  0•1•0•0•Updated Feb 17, 2025Feb 17, 2025

• first-steps-with-python-training

  Public
  repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

  Jupyter Notebook

  •

  Creative Commons Attribution 4.0 International

  •17•58•5•0•Updated Feb 12, 2025Feb 12, 2025

• dsQueryLibraryServer

  Public
  R

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• dsSwissKnife

  Public
  R

  •1•4•0•0•Updated Feb 10, 2025Feb 10, 2025

• open-data-registry

  Public
  A registry of publicly available datasets on AWS

  Python

  •

  Apache License 2.0

  •953•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• epinorm

  Public
  Scripts for processing of disease outbreak records as part of the MOOD project.

  Python

  •

  GNU General Public License v3.0

  •0•2•1•0•Updated Feb 7, 2025Feb 7, 2025

• hugo-pathogens-portal

  Public
  Hugo pathogens portal theme

  hugo-themehugopathogens

  HTML

  •

  MIT License

  •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

• glittr

  Public
  A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

  PHP

  •

  MIT License

  •2•37•3•0•Updated Feb 5, 2025Feb 5, 2025

• first-steps-with-R-training

  Public
  repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

  trainingrprogramming+ 1training-materials

  R

  •

  Creative Commons Attribution 4.0 International

  •12•45•2•0•Updated Feb 5, 2025Feb 5, 2025

• Introduction-to-statistics-with-R

  Public
  Other

  •2•4•1•3•Updated Jan 31, 2025Jan 31, 2025

• intro-bayesian-statistics-training

  Public
  SIB course on bayesian statistics with applications using Rstan

  trainingrstatistics+ 2training-materialsbayesian-statistics

  HTML

  •

  Creative Commons Attribution 4.0 International

  •10•28•0•0•Updated Jan 28, 2025Jan 28, 2025

• sparql-editor

  Public
  💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

  sparqlsparql-querysparql-query-builder+ 2sparql-editoryasgui

  TypeScript

  •

  MIT License

  •0•9•6•0•Updated Jan 20, 2025Jan 20, 2025

• AWS-docker

  Public
  Set of commands to deploy docker containers on an AWS instance

  teachingdockeraws+ 1containers

  Shell

  •

  MIT License

  •1•5•0•0•Updated Jan 14, 2025Jan 14, 2025