snap-stanford

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83 repositories

planet
Public
PlaNet: Predicting population response to drugs via clinical knowledge graph
knowledge-graph language-model graph-neural-networks biomedicine
Python
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MIT License
•4•21•0•0•Updated Feb 27, 2025Feb 27, 2025
UCE
Public
UCE is a zero-shot foundation model for single-cell gene expression data
Python
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MIT License
•33•185•5•1•Updated Feb 27, 2025Feb 27, 2025
supply-chains
Public
Python
•0•5•1•1•Updated Feb 25, 2025Feb 25, 2025
POPPER
Public
Automated Hypothesis Testing with Agentic Sequential Falsifications
agent hypothesis-testing llm ai-for-science
Python
•10•143•0•0•Updated Feb 24, 2025Feb 24, 2025
ogb-web
Public
OGB website
SCSS
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MIT License
•0•0•0•0•Updated Feb 13, 2025Feb 13, 2025
KGWAS
Public
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
ai genetics knowledge-graph functional-genomics
Python
•5•55•1•1•Updated Feb 5, 2025Feb 5, 2025
GEARS
Public
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
Python
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MIT License
•44•230•14•2•Updated Feb 1, 2025Feb 1, 2025
stark
Public
STaRK: Benchmarking LLM Retrieval on Textual and Relational Knowledge Bases (NeurIPS D&B 2024)
nlp information-retrieval graph knowledge-base semi-structured-data multimodal llm
Python
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MIT License
•37•300•1•1•Updated Dec 31, 2024Dec 31, 2024
ogb
Public
Benchmark datasets, data loaders, and evaluators for graph machine learning
deep-learning datasets graph-neural-networks graph-machine-learning
Python
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MIT License
•402•2k•28•5•Updated Dec 9, 2024Dec 9, 2024
BioDiscoveryAgent
Public
BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments
Python
•6•38•1•0•Updated Nov 28, 2024Nov 28, 2024
relbench
Public
RelBench: Relational Deep Learning Benchmark
Python
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MIT License
•50•246•8•5•Updated Nov 26, 2024Nov 26, 2024
llm-social-network
Public
Jupyter Notebook
•4•17•0•0•Updated Nov 3, 2024Nov 3, 2024
precice
Public
Jupyter Notebook
•1•3•0•0•Updated Oct 29, 2024Oct 29, 2024
ViRel
Public
ViRel: Unsupervised Visual Relations Discovery with Graph-level Analogy
machine-learning representation-learning unsupervised-learning reasoning graph-neural-networks graph
Python
•5•9•2•1•Updated Aug 10, 2024Aug 10, 2024
relbench-user-study
Public
Python
•2•3•0•0•Updated Aug 7, 2024Aug 7, 2024
SATURN
Public
Jupyter Notebook
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MIT License
•20•117•1•0•Updated Jul 3, 2024Jul 3, 2024
neural-subgraph-learning-GNN
Public
Jupyter Notebook
•65•348•20•3•Updated Jun 25, 2024Jun 25, 2024
MLAgentBench
Public
Python
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MIT License
•44•276•3•2•Updated Jun 19, 2024Jun 19, 2024
ipf-network-inference
Public
Jupyter Notebook
•1•0•0•0•Updated Jun 18, 2024Jun 18, 2024
plato
Public
Python
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MIT License
•2•68•1•0•Updated Mar 22, 2024Mar 22, 2024
UCE_decoder
Public
Jupyter Notebook
•1•0•0•0•Updated Feb 2, 2024Feb 2, 2024
le_pde
Public
LE-PDE accelerates PDEs' forward simulation and inverse optimization via latent global evolution, achieving significant speedup with SOTA accuracy
accelerate pde latent-space surrogate-models inverse-optimization deep-learning
Jupyter Notebook
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MIT License
•5•24•0•0•Updated Jan 30, 2024Jan 30, 2024
lamp
Public
[ICLR23] First deep learning-based surrogate model that jointly learns the evolution model and optimizes computational cost via remeshing
reinforcement-learning physics-simulation multi-resolution controllable learned-simulation mesh-based
Python
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MIT License
•5•38•0•0•Updated Jan 30, 2024Jan 30, 2024
AutoTransfer
Public
Python
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Other
•0•1•0•0•Updated Jan 29, 2024Jan 29, 2024
caml
Public
Python
•0•5•2•0•Updated Jan 23, 2024Jan 23, 2024
snap
Public
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
C++
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Other
•801•2.2k•84•13•Updated Dec 10, 2023Dec 10, 2023
exposure-segregation
Public
Python
•0•13•0•0•Updated Nov 28, 2023Nov 28, 2023
deepsnap
Public
Python library assists deep learning on graphs
deep-learning pytorch graph-neural-networks
Python
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MIT License
•57•554•23•1•Updated Nov 11, 2023Nov 11, 2023
GraphGym
Public
Platform for designing and evaluating Graph Neural Networks (GNN)
Python
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Other
•187•1.8k•19•5•Updated Nov 10, 2023Nov 10, 2023
roland
Public
Jupyter Notebook
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Other
•23•132•6•0•Updated Nov 5, 2023Nov 5, 2023