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    37 repositories

    • methylVI-reproducibility

      Public
      Code to reproduce results from "Probabilistic modeling of single-cell bisulfite sequencing data with MethylVI"
      Jupyter Notebook
      •0•0•0•0•Updated Jan 11, 2025Jan 11, 2025

    • deepprofile-study

      Public
      Code for paper "A deep profile of gene expression across 18 human cancers"
      Jupyter Notebook
      •
      MIT License
      •2•16•2•0•Updated Dec 6, 2024Dec 6, 2024

    • MONET

      Public
      Transparent medical image AI via an image–text foundation model grounded in medical literature
      artificial-intelligencemedical-imagingdermatology
      Python
      •
      Other
      •4•58•6•0•Updated Dec 3, 2024Dec 3, 2024

    • CFS

      Public
      Implementation of contrastive feature selection
      Python
      •0•2•0•0•Updated Jul 30, 2024Jul 30, 2024

    • vit-shapley

      Public
      Python
      •6•28•8•1•Updated Jul 19, 2024Jul 19, 2024

    • methylVI

      Public
      A deep generative model for single-cell methylation data
      Python
      •2•4•0•0•Updated Apr 22, 2024Apr 22, 2024

    • contrastiveVI

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•51•5•0•Updated Apr 5, 2024Apr 5, 2024

    • deepprofile-data

      Public
      Data for "A deep profile of gene expression across 18 human cancers"
      MIT License
      •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • removal-robustness

      Public
      0•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • StrastiveVI

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Oct 16, 2023Oct 16, 2023

    • DIME

      Public
      Code for the paper "Estimating Conditional Mutual Information for Dynamic Feature Selection"
      Python
      •2•5•1•0•Updated Sep 29, 2023Sep 29, 2023

    • derm_audit

      Public
      Python
      •
      Other
      •2•9•0•0•Updated Sep 15, 2023Sep 15, 2023

    • cl-explainability

      Public
      Contrastive Corpus Attribution (COCOA)
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Jun 12, 2023Jun 12, 2023

    • MD-AD

      Public
      Jupyter Notebook
      •
      MIT License
      •1•10•0•0•Updated May 16, 2023May 16, 2023

    • ENABLAge

      Public
      Jupyter Notebook
      •8•7•0•0•Updated Apr 21, 2023Apr 21, 2023

    • PAUSE

      Public
      Code for paper "Principled feature attribution for unsupervised gene expression analysis"
      Jupyter Notebook
      •
      MIT License
      •0•11•0•0•Updated Mar 7, 2023Mar 7, 2023

    • express

      Public
      Code for paper "Uncovering expression signatures of synergistic drug response in acute myeloid leukemia by explaining AI ensembles"
      Jupyter Notebook
      •1•7•1•0•Updated Mar 1, 2023Mar 1, 2023

    • IMPACT

      Public
      This repository provides the dataset and code of Interpretable machine learning prediction of all-cause mortality.
      Jupyter Notebook
      •
      MIT License
      •4•21•1•0•Updated Oct 5, 2022Oct 5, 2022

    • suinleelab.github.io

      Public
      Project website
      HTML
      •0•0•0•0•Updated Oct 2, 2022Oct 2, 2022

    • Useful_Datasets_CSE_527

      Public
      Jupyter Notebook
      •3•5•0•0•Updated Sep 29, 2022Sep 29, 2022

    • shapley_algorithms

      Public
      Jupyter Notebook
      •2•16•0•0•Updated Jul 14, 2022Jul 14, 2022

    • contrastiveVI-reproducibility

      Public
      Repository for reproducing contrastiveVI results.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jul 8, 2022Jul 8, 2022

    • DeepSHAP

      Public
      Experiments for DeepSHAP paper.
      Jupyter Notebook
      •3•18•1•0•Updated May 26, 2022May 26, 2022

    • MM-cVAE

      Public
      Implementation of the moment matching contrastive VAE
      Python
      •1•6•2•0•Updated Feb 10, 2022Feb 10, 2022

    • path_explain

      Public
      A repository for explaining feature attributions and feature interactions in deep neural networks.
      pytorchinterpretable-deep-learningexplainable-aimachine-learningtensorflow
      Jupyter Notebook
      •
      MIT License
      •29•185•7•0•Updated Jan 16, 2022Jan 16, 2022

    • PAC

      Public
      Pathway Communities
      MIT License
      •0•0•0•0•Updated Sep 17, 2021Sep 17, 2021

    • coai

      Public
      Cost-Aware AI
      Jupyter Notebook
      •
      MIT License
      •1•8•0•0•Updated Jul 29, 2021Jul 29, 2021

    • HD-AE

      Public
      Code for paper "Transferable representations of single-cell transcriptomic data"
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•6•1•0•Updated May 19, 2021May 19, 2021

    • attributionpriors

      Public
      Tools for training explainable models using attribution priors.
      machine-learningtensorflowartificial-intelligenceinterpretable-deep-learning
      Jupyter Notebook
      •
      MIT License
      •8•120•2•0•Updated Mar 19, 2021Mar 19, 2021

    • cxr_covid

      Public
      Code for paper "AI for radiographic COVID-19 detection selects shortcuts over signal"
      Jupyter Notebook
      •
      Other
      •7•29•1•0•Updated Mar 19, 2021Mar 19, 2021